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💫 Parallel Hybrid Particle In Cell code with Adaptive mesh REfinement

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This PR has specific build needs for dependencies these can be seen at the following branches: https://github.com/mkn-nix/llnl.samrai/blob/phare/mkn.sh https://github.com/mkn-nix/llnl.raja/blob/phare/mkn.sh https://github.com/mkn-nix/llnl.umpire/blob/phare/mkn.sh

WIP

ion Beam test with AMR on Cholesky: ``` import pyphare.pharein as ph #lgtm [py/import-and-import-from] from pyphare.pharein import Simulation from pyphare.pharein import MaxwellianFluidModel from pyphare.pharein import ElectromagDiagnostics, FluidDiagnostics, ParticleDiagnostics from pyphare.pharein...

mostly there, some coarsening tests missing only some 3d split patterns, the rest can come afterwards ## Summary by CodeRabbit - **New Features** - Introduced 3D simulation capabilities with new...

WIP

changes originally in [3d](https://github.com/PhilipDeegan/PHARE/blob/3d_base/pyphare/pyphare/pharein/maxwellian_fluid_model.py#L144) PR pulled in to fix periodicity checks

The following python code : ```python #!/usr/bin/env python3 import pyphare.pharein as ph #lgtm [py/import-and-import-from] from pyphare.pharein import Simulation from pyphare.pharein import MaxwellianFluidModel from pyphare.pharein import ElectromagDiagnostics,FluidDiagnostics, ParticleDiagnostics from pyphare.pharein import...

bug 🔥

SAMRAI restart manager fails creating restart directories if user supplied restart path has a trailing slash. We need to remove any trailing slash beforehand. At the same time it would...

pharein

the key "refinement" may not exist if not populated from python https://github.com/PHAREHUB/PHARE/blob/master/src/amr/wrappers/integrator.h#L106 hence we force a group addition so we can count on the key exising https://github.com/PHAREHUB/PHARE/blob/pyphare/pyphare/pharein/__init__.py#147 follow on from...

bug 🔥

Observed in a 2D harris sheet with 2D tagging on 3 levels : ![image](https://user-images.githubusercontent.com/3200931/156335680-01004328-71bd-4568-b0fc-0c201acdb17d.png) Looks like the primal nodes at the level ghost border of the L2 patch (white line)...

bug 🔥