Matteo

@ekg Sure thing, I will! BTW, I run again the same command ``` singularity run --nv gfaestus_v0.1.0.sif /opt/gfaestus/target/release/gfaestus ../pangenome/pangenome_ref_guided_pggb.gfa ../pangenome/pangenome_ref_guided_pggb.og.lay.tsv ``` and I got exactly the same output..., I event...

Hi again, I'm happy to see there is a new version with _**cargo**_. This time I've been able to install it, since I'm visualizing the entire graph the output takes...

Unfortunately, I didn't save the screen output; however, it might very likely be for the reason you just mentioned. Can i access the log file from somewhere else? P.S. I'm...

I'm not quite sure how to do it with bin files...; however, I confirm that your hypothesis I might have used the same source of Hi-C information was correct. After...

Thanks a lot for your help. It just happened that running with Hi-C (both parental samples) resulted in an error: `*** stack smashing detected ***: terminated Aborted (core dumped) `...

Hi chhylp123, Did you had the chance to look at the last comment? In the meantime I leave you with both plots for HiFi (first row) and Hi-C (second row),...

No worries at all, no need to apologise. I will try to downsample in order to reduce the coverage. However, I just spoke with the authors of the paper where...

Hi again, I got the result of the second run. This time I can attach the _log file_; however, I will first comment the command line I used: `hifiasm -o...

Hi again after long, I'm almost sure the problem was related to a wrong storage of files online. They might have swapped one file short reads dataset with one HiC...

Thanks a lot, I see what you mean. My first approach has been to run the tool without any additional parameter to have a feeling of the raw output before,...