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OpenMS
pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
**Describe the problem you encountered** I have extracted a single chromatogram from a mzML files `MSExperiment`. When using `get_df()` on the `MSChromatogram` object I receive this error. I have confirmed...
Currently API docs will always follow the latest release at the time of the RTD build. This means the recent releases that I rebuilt due to messed up tagging have...
**What is the type of your request?** - [X] Incomplete / missing - [ ] Typo - [ ] Unclear - [ ] Not reproducible **Include a description of your...
**Describe the problem you encountered** https://pyopenms.readthedocs.io/en/latest/user_guide/installation.html Nightly pip install instructions install 3.2.0 rather than the latest version. **To Reproduce** Steps to reproduce the behavior:  **What should be happening** Installation...
## Summary by CodeRabbit * **Documentation** * Significantly expanded and restructured the README to provide comprehensive guidance on documentation architecture, build instructions, CI/CD workflows, development practices, Binder integration, troubleshooting, and...
## Summary by CodeRabbit - New Features - Introduced a dedicated PeptideIdentificationList container in the Python API for handling peptide identifications. - Enhanced 2D peak data retrieval to accept an...
**What is the type of your request?** On the C++ side we introduced a class PeptideIdentificationList to encapsulate the vector In pyOpenMS we previously used pep_ids = [], and then...