pyopenms-docs Code that should be wrapped in PyOpenMS

Code that should be wrapped in PyOpenMS

Open oliveralka opened this issue 4 years ago • 4 comments

Wrapping:

[ ] ./src/openms/include/OpenMS/METADATA/IonSource.h

static const std::string NamesOfPolarity[SIZE_OF_POLARITY];
static const std::string NamesOfInletType[SIZE_OF_INLETTYPE];
static const std::string NamesOfIonizationMethod[SIZE_OF_IONIZATIONMETHOD];

[ ] ./src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsotopeLabelingMDVs.h:

static const std::string NamesOfDerivatizationAgent[static_cast<int>(DerivatizationAgent::SIZE_OF_DERIVATIZATIONAGENT)];
static const std::string NamesOfMassIntensityType[static_cast<int>(MassIntensityType::SIZE_OF_MASSINTENSITYTYPE)];

[ ] ./src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestion.h

static const std::string NamesOfSpecificity[SIZE_OF_SPECIFICITY];

[ ] ./src/openms/include/OpenMS/FORMAT/MSNumpressCoder.h

static const std::string NamesOfNumpressCompression[SIZE_OF_NUMPRESSCOMPRESSION];

[ ] ./src/openms/include/OpenMS/METADATA/DataProcessing.h

static const std::string NamesOfProcessingAction[SIZE_OF_PROCESSINGACTION];

[ ] ./src/openms/include/OpenMS/METADATA/Modification.h

static const std::string NamesOfSpecificityType[SIZE_OF_SPECIFICITYTYPE];

[ ] ./src/openms/include/OpenMS/METADATA/SourceFile.h

static const std::string NamesOfChecksumType[SIZE_OF_CHECKSUMTYPE];

[ ] ./src/openms/include/OpenMS/METADATA/Instrument.h

static const std::string NamesOfIonOpticsType[SIZE_OF_IONOPTICSTYPE];

[ ] ./src/openms/include/OpenMS/METADATA/SpectrumSettings.h

static const std::string NamesOfSpectrumType[SIZE_OF_SPECTRUMTYPE];

[ ] ./src/openms/include/OpenMS/METADATA/IonDetector.h

static const std::string NamesOfType[SIZE_OF_TYPE];
static const std::string NamesOfAcquisitionMode[SIZE_OF_ACQUISITIONMODE];

[ ] ./src/openms/include/OpenMS/METADATA/Tagging.h

static const std::string NamesOfIsotopeVariant[SIZE_OF_ISOTOPEVARIANT];

[ ] ./src/openms/include/OpenMS/METADATA/InstrumentSettings.h:

static const std::string NamesOfScanMode[SIZE_OF_SCANMODE];

[ ] ./src/openms/include/OpenMS/METADATA/Precursor.h

static const std::string NamesOfActivationMethod[SIZE_OF_ACTIVATIONMETHOD];
static const std::string NamesOfActivationMethodShort[SIZE_OF_ACTIVATIONMETHOD];

[ ] ./src/openms/include/OpenMS/METADATA/MSQuantifications.h

static const std::string NamesOfQuantTypes[SIZE_OF_QUANT_TYPES];

[ ] ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h

static const std::string NamesOfAnalyzerType[SIZE_OF_ANALYZERTYPE];
static const std::string NamesOfResolutionMethod[SIZE_OF_RESOLUTIONMETHOD];
static const std::string NamesOfResolutionType[SIZE_OF_RESOLUTIONTYPE];
static const std::string NamesOfScanDirection[SIZE_OF_SCANDIRECTION];
static const std::string NamesOfScanLaw[SIZE_OF_SCANLAW];
static const std::string NamesOfReflectronState[SIZE_OF_REFLECTRONSTATE];

[ ] ./src/openms/include/OpenMS/METADATA/Sample.h

static const std::string NamesOfSampleState[SIZE_OF_SAMPLESTATE];

[ ] ./src/openms/include/OpenMS/METADATA/ProteinIdentification.h

static const std::string NamesOfPeakMassType[SIZE_OF_PEAKMASSTYPE];

[ ] ./src/openms/include/OpenMS/KERNEL/BaseFeature.h

static const std::string NamesOfAnnotationState[SIZE_OF_ANNOTATIONSTATE];

[ ] ./src/openms_gui/include/OpenMS/VISUAL/LayerData.h

static const std::string NamesOfLabelType[SIZE_OF_LABEL_TYPE];

Examples:

[x] Add example to readthedocs as this has been requested by users

Sep 14 '21 09:09 oliveralka

TODO: search for SIZE_OF_ and check if wrapped in pxd files

Sep 14 '21 09:09 timosachsenberg

./src/openms/include/OpenMS/ANALYSIS/QUANTITATION/Is ./src/openms/include/OpenMS/ANALYSIS/QUANTITATION/Is ./src/openms/include/OpenMS/ANALYSIS/QUANTITATION/Is ./src/openms/include/OpenMS/ANALYSIS/QUANTITATION/Is ./src/openms/include/OpenMS/ANALYSIS/QUANTITATION/It ./src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h: ./src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h: ./src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h: ./src/openms/include/OpenMS/ANALYSIS/ID/PeptideIndexing.h: ./src/openms/include/OpenMS/ANALYSIS/TARGETED/Target ./src/openms/include/OpenMS/ANALYSIS/TARGETED/Target ./src/openms/include/OpenMS/ANALYSIS/TARGETED/Target ./src/openms/include/OpenMS/ANALYSIS/TARGETED/Target ./src/openms/include/OpenMS/ANALYSIS/SEQUENCE/NeedlemanWunsch.h: ./src/openms/include/OpenMS/ANALYSIS/OPENSWATH/PeakP ./src/openms/include/OpenMS/DATASTRUCTURES/OSWData.h: ./src/openms/include/OpenMS/DATASTRUCTURES/OSWData.h: ./src/openms/include/OpenMS/DATASTRUCTURES/OSWData.h: ./src/openms/include/OpenMS/DATASTRUCTURES/OSWData.h: ./src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h: ./src/openms/include/OpenMS/FILTERING/CALIBRATION/MZTrafoModel.h: ./src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestion.h: ./src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestion.h: ./src/openms/include/OpenMS/CHEMISTRY/WeightWrapper.h: ./src/openms/include/OpenMS/IONMOBILITY/IMTypes.h: ./src/openms/include/OpenMS/IONMOBILITY/IMTypes.h: ./src/openms/include/OpenMS/IONMOBILITY/IMTypes.h: ./src/openms/include/OpenMS/IONMOBILITY/IMTypes.h: ./src/openms/include/OpenMS/IONMOBILITY/IMTypes.h: ./src/openms/include/OpenMS/IONMOBILITY/IMTypes.h: ./src/openms/include/OpenMS/FORMAT/FileTypes.h: ./src/openms/include/OpenMS/FORMAT/PercolatorOutfile.h: ./src/openms/include/OpenMS/FORMAT/PercolatorOutfile.h: ./src/openms/include/OpenMS/FORMAT/MSNumpressCoder.h: ./src/openms/include/OpenMS/FORMAT/MSNumpressCoder.h: ./src/openms/include/OpenMS/FORMAT/MSNumpressCoder.h: ./src/openms/include/OpenMS/FORMAT/MSNumpressCoder.h: ./src/openms/include/OpenMS/FORMAT/MzTab.h: ./src/openms/include/OpenMS/FORMAT/OSWFile.h: ./src/openms/include/OpenMS/FORMAT/OSWFile.h: ./src/openms/include/OpenMS/METADATA/ChromatogramSettings.h: ./src/openms/include/OpenMS/METADATA/ChromatogramSettings.h: ./src/openms/include/OpenMS/METADATA/DataProcessing.h: ./src/openms/include/OpenMS/METADATA/DataProcessing.h: ./src/openms/include/OpenMS/METADATA/Modification.h: ./src/openms/include/OpenMS/METADATA/Modification.h: ./src/openms/include/OpenMS/METADATA/SourceFile.h: ./src/openms/include/OpenMS/METADATA/SourceFile.h: ./src/openms/include/OpenMS/METADATA/IonSource.h: ./src/openms/include/OpenMS/METADATA/IonSource.h: ./src/openms/include/OpenMS/METADATA/IonSource.h: ./src/openms/include/OpenMS/METADATA/IonSource.h: ./src/openms/include/OpenMS/METADATA/IonSource.h: ./src/openms/include/OpenMS/METADATA/IonSource.h: ./src/openms/include/OpenMS/METADATA/Instrument.h: ./src/openms/include/OpenMS/METADATA/Instrument.h: ./src/openms/include/OpenMS/METADATA/SpectrumSettings.h: ./src/openms/include/OpenMS/METADATA/SpectrumSettings.h: ./src/openms/include/OpenMS/METADATA/IonDetector.h: ./src/openms/include/OpenMS/METADATA/IonDetector.h: ./src/openms/include/OpenMS/METADATA/IonDetector.h: ./src/openms/include/OpenMS/METADATA/IonDetector.h: ./src/openms/include/OpenMS/METADATA/Tagging.h: ./src/openms/include/OpenMS/METADATA/Tagging.h: ./src/openms/include/OpenMS/METADATA/InstrumentSettings.h: ./src/openms/include/OpenMS/METADATA/InstrumentSettings.h: ./src/openms/include/OpenMS/METADATA/Precursor.h: ./src/openms/include/OpenMS/METADATA/Precursor.h: ./src/openms/include/OpenMS/METADATA/Precursor.h: ./src/openms/include/OpenMS/METADATA/ID/MetaData.h: ./src/openms/include/OpenMS/METADATA/ID/MetaData.h: ./src/openms/include/OpenMS/METADATA/ID/MoleculeQueryMatch.h: ./src/openms/include/OpenMS/METADATA/MSQuantifications.h: ./src/openms/include/OpenMS/METADATA/MSQuantifications.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/MassAnalyzer.h: ./src/openms/include/OpenMS/METADATA/Sample.h: ./src/openms/include/OpenMS/METADATA/Sample.h: ./src/openms/include/OpenMS/METADATA/ProteinIdentification.h: ./src/openms/include/OpenMS/METADATA/ProteinIdentification.h: ./src/openms/include/OpenMS/QC/QCBase.h: ./src/openms/include/OpenMS/QC/QCBase.h: ./src/openms/include/OpenMS/KERNEL/MassTrace.h: ./src/openms/include/OpenMS/KERNEL/MassTrace.h: ./src/openms/include/OpenMS/KERNEL/MassTrace.h: ./src/openms/include/OpenMS/KERNEL/BaseFeature.h: ./src/openms/include/OpenMS/KERNEL/BaseFeature.h: ./src/openms/thirdparty/seqan/include/seqan/modifier ./src/openms_gui/include/OpenMS/VISUAL/MISC/GUIHelpers.h: ./src/openms_gui/include/OpenMS/VISUAL/MISC/GUIHelpers.h: ./src/openms_gui/include/OpenMS/VISUAL/MISC/GUIHelpers.h: ./src/openms_gui/include/OpenMS/VISUAL/DataSelectionTabs.h: ./src/openms_gui/include/OpenMS/VISUAL/LayerData.h: ./src/openms_gui/include/OpenMS/VISUAL/LayerData.h: ./src/openms_gui/include/OpenMS/VISUAL/LayerData.h: ./src/openms_gui/include/OpenMS/VISUAL/LayerData.h:

Edit: A bit clearer

➜  OpenMS git:(develop) find . -name "*.h" -exec grep -H "SIZE_OF_*" {} \; otopeLabelingMDVs.h:      SIZE_OF_DERIVATIZATIONAGENT otopeLabelingMDVs.h:      SIZE_OF_MASSINTENSITYTYPE otopeLabelingMDVs.h:    static const std::string NamesOfDerivatizationAgent[static_cast<int>(DerivatizationAgent::SIZE_OF_DERIVATIZATIONAGENT)]; otopeLabelingMDVs.h:    static const std::string NamesOfMassIntensityType[static_cast<int>(MassIntensityType::SIZE_OF_MASSINTENSITYTYPE)]; raqConstants.h:    enum ITRAQ_TYPES {FOURPLEX = 0, EIGHTPLEX, TMT_SIXPLEX, SIZE_OF_ITRAQ_TYPES}; SIZE_OF_UNMATCHED static const std::array<std::string, (Size)Unmatched::SIZE_OF_UNMATCHED> names_of_unmatched; SIZE_OF_MISSING_DECOY static const std::array<std::string, (Size)MissingDecoy::SIZE_OF_MISSING_DECOY> names_of_missing_decoy; edExperimentHelper.h:        SIZE_OF_RTUNIT edExperimentHelper.h:        SIZE_OF_RTTYPE edExperimentHelper.h:        retention_time_unit(RTUnit::SIZE_OF_RTUNIT), edExperimentHelper.h:        retention_time_type(RTType::SIZE_OF_RTTYPE), SIZE_OF_SCORINGMATRIX ickerMRM.h:	enum FLOATINDICES { IDX_FWHM = 0, IDX_ABUNDANCE = 1, IDX_LEFTBORDER = 2, IDX_RIGHTBORDER = 3, SIZE_OF_FLOATINDICES }; SIZE_OF_VALUES static const char* LevelName[SIZE_OF_VALUES]; OSWHierarchy::Level lowest = OSWHierarchy::Level::SIZE_OF_VALUES; return lowest != OSWHierarchy::Level::SIZE_OF_VALUES; enum MODELTYPE { LINEAR, LINEAR_WEIGHTED, QUADRATIC, QUADRATIC_WEIGHTED, SIZE_OF_MODELTYPE }; Returns 'SIZE_OF_MODELTYPE' if string is unknown. SIZE_OF_SPECIFICITY = 10 static const std::string NamesOfSpecificity[SIZE_OF_SPECIFICITY]; enum WEIGHTMODE {AVERAGE = 0, MONO, SIZE_OF_WEIGHTMODE}; SIZE_OF_DRIFTTIMEUNIT OPENMS_DLLAPI extern const std::string NamesOfDriftTimeUnit[(size_t) DriftTimeUnit::SIZE_OF_DRIFTTIMEUNIT]; /// @throws Exception::InvalidValue if @p value is SIZE_OF_DRIFTTIMEUNIT SIZE_OF_IMFORMAT OPENMS_DLLAPI extern const std::string NamesOfIMFormat[(size_t) IMFormat::SIZE_OF_IMFORMAT]; /// @throws Exception::InvalidValue if @p value is SIZE_OF_IMFORMAT SIZE_OF_TYPE        ///< No file type. Simply stores the number of types enum ScoreType { QVALUE, POSTERRPROB, SCORE, SIZE_OF_SCORETYPE }; static const std::string score_type_names[SIZE_OF_SCORETYPE]; SIZE_OF_NUMPRESSCOMPRESSION static const std::string NamesOfNumpressCompression[SIZE_OF_NUMPRESSCOMPRESSION]; NamesOfNumpressCompression + SIZE_OF_NUMPRESSCOMPRESSION, compression); if (match == NamesOfNumpressCompression + SIZE_OF_NUMPRESSCOMPRESSION) // == end() SIZE_OF_MZTAB_CELLTYPE SIZE_OF_OSWLEVEL static const std::array<std::string, (Size)OSWLevel::SIZE_OF_OSWLEVEL> names_of_oswlevel; SIZE_OF_CHROMATOGRAM_TYPE // last entry! static const char * const ChromatogramNames[SIZE_OF_CHROMATOGRAM_TYPE+1]; // avoid string[], since it gets copied onto heap on initialization SIZE_OF_PROCESSINGACTION static const std::string NamesOfProcessingAction[SIZE_OF_PROCESSINGACTION]; , SIZE_OF_SPECIFICITYTYPE static const std::string NamesOfSpecificityType[SIZE_OF_SPECIFICITYTYPE]; SIZE_OF_CHECKSUMTYPE static const std::string NamesOfChecksumType[SIZE_OF_CHECKSUMTYPE]; SIZE_OF_INLETTYPE static const std::string NamesOfInletType[SIZE_OF_INLETTYPE]; SIZE_OF_IONIZATIONMETHOD static const std::string NamesOfIonizationMethod[SIZE_OF_IONIZATIONMETHOD]; SIZE_OF_POLARITY static const std::string NamesOfPolarity[SIZE_OF_POLARITY]; SIZE_OF_IONOPTICSTYPE static const std::string NamesOfIonOpticsType[SIZE_OF_IONOPTICSTYPE]; SIZE_OF_SPECTRUMTYPE static const std::string NamesOfSpectrumType[SIZE_OF_SPECTRUMTYPE]; SIZE_OF_TYPE static const std::string NamesOfType[SIZE_OF_TYPE]; SIZE_OF_ACQUISITIONMODE static const std::string NamesOfAcquisitionMode[SIZE_OF_ACQUISITIONMODE]; enum IsotopeVariant {LIGHT, HEAVY, SIZE_OF_ISOTOPEVARIANT}; static const std::string NamesOfIsotopeVariant[SIZE_OF_ISOTOPEVARIANT]; SIZE_OF_SCANMODE static const std::string NamesOfScanMode[SIZE_OF_SCANMODE]; SIZE_OF_ACTIVATIONMETHOD static const std::string NamesOfActivationMethod[SIZE_OF_ACTIVATIONMETHOD]; static const std::string NamesOfActivationMethodShort[SIZE_OF_ACTIVATIONMETHOD]; SIZE_OF_MOLECULETYPE SIZE_OF_MASSTYPE return MoleculeType::SIZE_OF_MOLECULETYPE; // this shouldn't happen enum QUANT_TYPES {MS1LABEL = 0, MS2LABEL, LABELFREE, SIZE_OF_QUANT_TYPES};       // derived from processing applied static const std::string NamesOfQuantTypes[SIZE_OF_QUANT_TYPES]; SIZE_OF_ANALYZERTYPE static const std::string NamesOfAnalyzerType[SIZE_OF_ANALYZERTYPE]; SIZE_OF_RESOLUTIONMETHOD static const std::string NamesOfResolutionMethod[SIZE_OF_RESOLUTIONMETHOD]; SIZE_OF_RESOLUTIONTYPE static const std::string NamesOfResolutionType[SIZE_OF_RESOLUTIONTYPE]; SIZE_OF_SCANDIRECTION static const std::string NamesOfScanDirection[SIZE_OF_SCANDIRECTION]; SIZE_OF_SCANLAW static const std::string NamesOfScanLaw[SIZE_OF_SCANLAW]; SIZE_OF_REFLECTRONSTATE static const std::string NamesOfReflectronState[SIZE_OF_REFLECTRONSTATE]; enum SampleState {SAMPLENULL, SOLID, LIQUID, GAS, SOLUTION, EMULSION, SUSPENSION, SIZE_OF_SAMPLESTATE}; static const std::string NamesOfSampleState[SIZE_OF_SAMPLESTATE]; SIZE_OF_PEAKMASSTYPE static const std::string NamesOfPeakMassType[SIZE_OF_PEAKMASSTYPE]; SIZE_OF_REQUIRES SIZE_OF_TOLERANCEUNIT SIZE_OF_MT_QUANTMETHOD static const std::string names_of_quantmethod[SIZE_OF_MT_QUANTMETHOD]; /// converts a string to enum value; returns 'SIZE_OF_MT_QUANTMETHOD' upon error SIZE_OF_ANNOTATIONSTATE static const std::string NamesOfAnnotationState[SIZE_OF_ANNOTATIONSTATE]; /modifier_alphabet_expansion.h:template <int SIZE_OF_SOURCE> SIZE_OF_NAMES const std::array<QColor, NAMES::SIZE_OF_NAMES> values = { { Qt::red, if (index >= COLOR_CLASS::NAMES::SIZE_OF_NAMES) index = index % COLOR_CLASS::NAMES::SIZE_OF_NAMES; SIZE_OF_TAB_INDEX SIZE_OF_FLAGS std::bitset<SIZE_OF_FLAGS> flags; SIZE_OF_LABEL_TYPE static const std::string NamesOfLabelType[SIZE_OF_LABEL_TYPE];
./src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsotopeLabelingMDVs.h:    static const std::string NamesOfDerivatizationAgent[static_cast<int>(DerivatizationAgent::SIZE_OF_DERIVATIZATIONAGENT)];
./src/openms/include/OpenMS/ANALYSIS/QUANTITATION/IsotopeLabelingMDVs.h:    static const std::string NamesOfMassIntensityType[static_cast<int>(MassIntensityType::SIZE_OF_MASSINTENSITYTYPE)];
./src/openms/include/OpenMS/CHEMISTRY/EnzymaticDigestion.h:    static const std::string NamesOfSpecificity[SIZE_OF_SPECIFICITY];
./src/openms/include/OpenMS/FORMAT/MSNumpressCoder.h:    static const std::string NamesOfNumpressCompression[SIZE_OF_NUMPRESSCOMPRESSION];
./src/openms/include/OpenMS/METADATA/DataProcessing.h:    static const std::string NamesOfProcessingAction[SIZE_OF_PROCESSINGACTION];
./src/openms/include/OpenMS/METADATA/Modification.h:    static const std::string NamesOfSpecificityType[SIZE_OF_SPECIFICITYTYPE];
./src/openms/include/OpenMS/METADATA/SourceFile.h:    static const std::string NamesOfChecksumType[SIZE_OF_CHECKSUMTYPE];
./src/openms/include/OpenMS/METADATA/IonSource.h:    static const std::string NamesOfInletType[SIZE_OF_INLETTYPE];
./src/openms/include/OpenMS/METADATA/IonSource.h:    static const std::string NamesOfIonizationMethod[SIZE_OF_IONIZATIONMETHOD];
./src/openms/include/OpenMS/METADATA/IonSource.h:    static const std::string NamesOfPolarity[SIZE_OF_POLARITY];
./src/openms/include/OpenMS/METADATA/Instrument.h:    static const std::string NamesOfIonOpticsType[SIZE_OF_IONOPTICSTYPE];
./src/openms/include/OpenMS/METADATA/SpectrumSettings.h:    static const std::string NamesOfSpectrumType[SIZE_OF_SPECTRUMTYPE];
./src/openms/include/OpenMS/METADATA/IonDetector.h:    static const std::string NamesOfType[SIZE_OF_TYPE];
./src/openms/include/OpenMS/METADATA/IonDetector.h:    static const std::string NamesOfAcquisitionMode[SIZE_OF_ACQUISITIONMODE];
./src/openms/include/OpenMS/METADATA/Tagging.h:    static const std::string NamesOfIsotopeVariant[SIZE_OF_ISOTOPEVARIANT];
./src/openms/include/OpenMS/METADATA/InstrumentSettings.h:    static const std::string NamesOfScanMode[SIZE_OF_SCANMODE];
./src/openms/include/OpenMS/METADATA/Precursor.h:    static const std::string NamesOfActivationMethod[SIZE_OF_ACTIVATIONMETHOD];
./src/openms/include/OpenMS/METADATA/Precursor.h:    static const std::string NamesOfActivationMethodShort[SIZE_OF_ACTIVATIONMETHOD];
./src/openms/include/OpenMS/METADATA/MSQuantifications.h:    static const std::string NamesOfQuantTypes[SIZE_OF_QUANT_TYPES];
./src/openms/include/OpenMS/METADATA/MassAnalyzer.h:    static const std::string NamesOfAnalyzerType[SIZE_OF_ANALYZERTYPE];
./src/openms/include/OpenMS/METADATA/MassAnalyzer.h:    static const std::string NamesOfResolutionMethod[SIZE_OF_RESOLUTIONMETHOD];
./src/openms/include/OpenMS/METADATA/MassAnalyzer.h:    static const std::string NamesOfResolutionType[SIZE_OF_RESOLUTIONTYPE];
./src/openms/include/OpenMS/METADATA/MassAnalyzer.h:    static const std::string NamesOfScanDirection[SIZE_OF_SCANDIRECTION];
./src/openms/include/OpenMS/METADATA/MassAnalyzer.h:    static const std::string NamesOfScanLaw[SIZE_OF_SCANLAW];
./src/openms/include/OpenMS/METADATA/MassAnalyzer.h:    static const std::string NamesOfReflectronState[SIZE_OF_REFLECTRONSTATE];
./src/openms/include/OpenMS/METADATA/Sample.h:    static const std::string NamesOfSampleState[SIZE_OF_SAMPLESTATE];
./src/openms/include/OpenMS/METADATA/ProteinIdentification.h:    static const std::string NamesOfPeakMassType[SIZE_OF_PEAKMASSTYPE];
./src/openms/include/OpenMS/KERNEL/BaseFeature.h:    static const std::string NamesOfAnnotationState[SIZE_OF_ANNOTATIONSTATE];
./src/openms_gui/include/OpenMS/VISUAL/LayerData.h:    static const std::string NamesOfLabelType[SIZE_OF_LABEL_TYPE];


                                    
                                    
                                        
                                            
                                            
                                                Sep 14
                                                '21  09:09
                                            
                                            
                                                oliveralka


                                                                    
                                    
                                        
Ok, it seems the wrapping of this array lookup is not straightforward:
.h
static const std::string NamesOfPolarity[SIZE_OF_POLARITY];
.cpp
const std::string IonSource::NamesOfPolarity[] = {"unknown", "positive", "negative"};
.pxd
cdef extern from "<OpenMS/METADATA/IonSource.h>" namespace "OpenMS::IonSource":

libcpp_string NamesOfPolarity[SIZE_OF_POLARITY] nogil except + # wrap-attach:IonSource # wrap-doc:Returns names of polarity of the ion source 

Error: Syntax error in C variable declaration
@hroest Do you have a suggestion?

                                    
                                    
                                        
                                            
                                            
                                                Sep 14
                                                '21  13:09
                                            
                                            
                                                oliveralka
                                            
                                        
                                    
                                    
                                
                                                                    
                                    
                                        
I think we might need some get*Name wrapper ala:
const std::string& getPolarityName(const IonSource::Polarity& p)

                                    
                                    
                                        
                                            
                                            
                                                Sep 14
                                                '21  13:09
                                            
                                            
                                                timosachsenberg

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Code that should be wrapped in PyOpenMS

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