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20 hours ago •
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OpenDrift
Always fail to find "sea_water_velocity" when using "add_readers_from_list"
trafficstars
Hi all,
I downloaded the TOPAZ4 data (https://doi.org/10.48670/moi-00007) to local and try to read it with "add_readers_from_list", but the error "Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']" always occurs. The complete code and DEBUG info are as follows.
Looking forward to your advice.
Best wishes, Daye
Code:
#!/usr/bin/env python
"""
Icebergs (openberg)
====================
"""
import matplotlib.pyplot as plt
import numpy as np
import cf_xarray
import xarray as xr
import os
from opendrift.models.openberg import OpenBerg
from opendrift.readers.reader_netCDF_CF_generic import Reader
from datetime import datetime,timedelta
o = OpenBerg(loglevel = 0)
o.add_readers_from_list(['/yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc', '/yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc', '/yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc'], lazy = False)#Ocean and Ice
iceBerg_L = 100.0
iceBerg_W = 40.0
iceBerg_H = 100.0
iceBerg_sail = 10.0
iceBerg_draft = 9.0*iceBerg_sail
o.seed_elements(lon = -7.29897833333333, lat = 77.517365, time=datetime(2013, 9, 1, 2, 12), number = 1, radius = 1, sail = iceBerg_sail, draft = iceBerg_draft, length = iceBerg_L, width = iceBerg_W, wind_drag_coeff = 1.5, water_drag_coeff = 1.5)
o.run(duration = timedelta(hours=10.0), time_step=timedelta(hours=1.0))
DEBUG info:
20:27:57 DEBUG opendrift.config:168: Adding 18 config items from __init__
20:27:57 DEBUG opendrift.config:178: Overwriting config item readers:max_number_of_fails
20:27:57 DEBUG opendrift.config:168: Adding 14 config items from __init__
20:27:58 INFO opendrift.models.basemodel:506: OpenDriftSimulation initialised (version 1.13.0 / v1.13.0-5-g74025f1)
20:27:58 DEBUG opendrift.config:168: Adding 15 config items from oceandrift
20:27:58 DEBUG opendrift.config:178: Overwriting config item seed:z
20:27:58 DEBUG opendrift.config:168: Adding 11 config items from openberg
20:27:58 DEBUG opendrift.config:178: Overwriting config item drift:stokes_drift
20:27:58 DEBUG opendrift.readers:136: Testing reader <module 'opendrift.readers.reader_netCDF_CF_generic' from '/home/daye/Code/OpenDrift/opendrift/opendrift/readers/reader_netCDF_CF_generic.py'>
20:27:58 INFO opendrift.readers:58: Opening file with xr.open_dataset
20:27:58 DEBUG opendrift.readers.reader_netCDF_CF_generic:128: Finding coordinate variables.
20:27:58 DEBUG opendrift.readers.reader_netCDF_CF_generic:143: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'latitude_of_projection_origin': 90.0, 'longitude_of_projection_origin': -45.0, 'scale_factor_at_projection_origin': 1.0, 'straight_vertical_longitude_from_pole': -45.0, 'earth_radius': 6378273.0, 'proj4': '+proj=stere +lon_0=-45 +lat_0=90 +k=1 +R=6378273 +no_defs', 'false_easting': 0.0, 'false_northing': 0.0}
20:27:58 INFO opendrift.readers.reader_netCDF_CF_generic:338: Detected dimensions: {'time': 'time', 'z': 'depth', 'x': 'x', 'y': 'y'}
20:27:58 WARNING opendrift.readers.basereader.variables:601: Assuming time step of 1 hour for /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
20:27:58 DEBUG opendrift.readers.basereader.variables:608: Setting buffer size 4 for reader /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc, assuming a maximum average speed of 5 m/s and time span of 1:00:00
20:27:58 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
20:27:58 DEBUG opendrift.readers.basereader.variables:563: Adding variable mapping: ['sea_ice_x_velocity', 'sea_ice_y_velocity'] -> sea_ice_speed
20:27:58 DEBUG opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
20:27:58 DEBUG opendrift.readers:136: Testing reader <module 'opendrift.readers.reader_netCDF_CF_generic' from '/home/daye/Code/OpenDrift/opendrift/opendrift/readers/reader_netCDF_CF_generic.py'>
20:27:58 INFO opendrift.readers:58: Opening file with xr.open_dataset
20:27:58 DEBUG opendrift.readers.reader_netCDF_CF_generic:128: Finding coordinate variables.
20:27:58 DEBUG opendrift.readers.reader_netCDF_CF_generic:143: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'latitude_of_projection_origin': 90.0, 'longitude_of_projection_origin': -45.0, 'scale_factor_at_projection_origin': 1.0, 'straight_vertical_longitude_from_pole': -45.0, 'earth_radius': 6378273.0, 'proj4': '+proj=stere +lon_0=-45 +lat_0=90 +k=1 +R=6378273 +no_defs', 'false_easting': 0.0, 'false_northing': 0.0}
20:27:58 INFO opendrift.readers.reader_netCDF_CF_generic:338: Detected dimensions: {'time': 'time', 'z': 'depth', 'x': 'x', 'y': 'y'}
20:27:58 WARNING opendrift.readers.basereader.variables:601: Assuming time step of 1 hour for /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
20:27:58 DEBUG opendrift.readers.basereader.variables:608: Setting buffer size 4 for reader /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc, assuming a maximum average speed of 5 m/s and time span of 1:00:00
20:27:58 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
20:27:58 DEBUG opendrift.readers.basereader.variables:563: Adding variable mapping: ['sea_ice_x_velocity', 'sea_ice_y_velocity'] -> sea_ice_speed
20:27:58 DEBUG opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
20:27:58 DEBUG opendrift.readers:136: Testing reader <module 'opendrift.readers.reader_netCDF_CF_generic' from '/home/daye/Code/OpenDrift/opendrift/opendrift/readers/reader_netCDF_CF_generic.py'>
20:27:58 INFO opendrift.readers:58: Opening file with xr.open_dataset
20:27:58 DEBUG opendrift.readers.reader_netCDF_CF_generic:128: Finding coordinate variables.
20:27:58 DEBUG opendrift.readers.reader_netCDF_CF_generic:143: Parsing CF grid mapping dictionary: {'grid_mapping_name': 'polar_stereographic', 'latitude_of_projection_origin': 90.0, 'longitude_of_projection_origin': -45.0, 'scale_factor_at_projection_origin': 1.0, 'straight_vertical_longitude_from_pole': -45.0, 'earth_radius': 6378273.0, 'proj4': '+proj=stere +lon_0=-45 +lat_0=90 +k=1 +R=6378273 +no_defs', 'false_easting': 0.0, 'false_northing': 0.0}
20:27:58 INFO opendrift.readers.reader_netCDF_CF_generic:338: Detected dimensions: {'time': 'time', 'z': 'depth', 'x': 'x', 'y': 'y'}
20:27:58 WARNING opendrift.readers.basereader.variables:601: Assuming time step of 1 hour for /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
20:27:58 DEBUG opendrift.readers.basereader.variables:608: Setting buffer size 4 for reader /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc, assuming a maximum average speed of 5 m/s and time span of 1:00:00
20:27:58 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
20:27:58 DEBUG opendrift.readers.basereader.variables:563: Adding variable mapping: ['sea_ice_x_velocity', 'sea_ice_y_velocity'] -> sea_ice_speed
20:27:58 DEBUG opendrift.readers.basereader.variables:563: Adding variable mapping: ['x_sea_water_velocity', 'y_sea_water_velocity'] -> sea_water_speed
20:27:58 DEBUG opendrift.models.basemodel.environment:316: Added reader /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
20:27:58 DEBUG opendrift.models.basemodel.environment:316: Added reader /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
20:27:58 DEBUG opendrift.models.basemodel.environment:316: Added reader /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
20:27:58 INFO opendrift.models.basemodel.environment:206: Adding a dynamical landmask with max. priority based on assumed maximum speed of 2.0 m/s. Adding a customised landmask may be faster...
20:27:58 DEBUG opendrift.readers.basereader:186: Variable mapping: ['sea_floor_depth_below_sea_level'] -> ['land_binary_mask'] is not activated
20:28:00 DEBUG opendrift.models.basemodel.environment:316: Added reader global_landmask
20:28:00 INFO opendrift.models.basemodel.environment:233: Fallback values will be used for the following variables which have no readers:
20:28:00 INFO opendrift.models.basemodel.environment:236: sea_surface_x_slope: 0.000000
20:28:00 INFO opendrift.models.basemodel.environment:236: sea_surface_y_slope: 0.000000
20:28:00 INFO opendrift.models.basemodel.environment:236: x_wind: 0.000000
20:28:00 INFO opendrift.models.basemodel.environment:236: y_wind: 0.000000
20:28:00 INFO opendrift.models.basemodel.environment:236: sea_surface_wave_significant_height: 0.000000
20:28:00 INFO opendrift.models.basemodel.environment:236: sea_surface_wave_from_direction: 0.000000
20:28:00 INFO opendrift.models.basemodel.environment:236: sea_surface_wave_stokes_drift_x_velocity: 0.000000
20:28:00 INFO opendrift.models.basemodel.environment:236: sea_surface_wave_stokes_drift_y_velocity: 0.000000
20:28:00 DEBUG opendrift.models.basemodel:97: Changed mode from Mode.Config to Mode.Ready
20:28:00 DEBUG opendrift.models.basemodel:97: Changed mode from Mode.Ready to Mode.Run
19:28:00 DEBUG numcodecs:73: Registering codec 'zlib'
19:28:00 DEBUG numcodecs:73: Registering codec 'gzip'
19:28:00 DEBUG numcodecs:73: Registering codec 'bz2'
19:28:00 DEBUG numcodecs:73: Registering codec 'lzma'
19:28:00 DEBUG numcodecs:73: Registering codec 'blosc'
19:28:00 DEBUG numcodecs:73: Registering codec 'zstd'
19:28:00 DEBUG numcodecs:73: Registering codec 'lz4'
19:28:00 DEBUG numcodecs:73: Registering codec 'astype'
19:28:00 DEBUG numcodecs:73: Registering codec 'delta'
19:28:00 DEBUG numcodecs:73: Registering codec 'quantize'
19:28:00 DEBUG numcodecs:73: Registering codec 'fixedscaleoffset'
19:28:00 DEBUG numcodecs:73: Registering codec 'packbits'
19:28:00 DEBUG numcodecs:73: Registering codec 'categorize'
19:28:00 DEBUG numcodecs:73: Registering codec 'pickle'
19:28:00 DEBUG numcodecs:73: Registering codec 'base64'
19:28:00 DEBUG numcodecs:73: Registering codec 'shuffle'
19:28:00 DEBUG numcodecs:73: Registering codec 'bitround'
19:28:00 DEBUG numcodecs:73: Registering codec 'crc32'
19:28:00 DEBUG numcodecs:73: Registering codec 'adler32'
19:28:00 DEBUG numcodecs:73: Registering codec 'jenkins_lookup3'
19:28:00 DEBUG numcodecs:73: Registering codec 'json2'
19:28:00 DEBUG numcodecs:73: Registering codec 'vlen-utf8'
19:28:00 DEBUG numcodecs:73: Registering codec 'vlen-bytes'
19:28:00 DEBUG numcodecs:73: Registering codec 'vlen-array'
19:28:00 DEBUG numcodecs:73: Registering codec 'fletcher32'
19:28:00 DEBUG numcodecs:73: Registering codec 'msgpack2'
19:28:00 DEBUG numcodecs:73: Registering codec 'n5_wrapper'
19:28:00 DEBUG opendrift.models.basemodel:1760:
------------------------------------------------------
Software and hardware:
OpenDrift version 1.13.0
Platform: Linux, 5.15.0-131-generic
15.341224670410156 GB memory
12 processors (x86_64)
NumPy version 1.26.4
SciPy version 1.15.1
Matplotlib version 3.9.1
NetCDF4 version 1.6.1
Xarray version 2025.1.2
ADIOS (adios_db) version 1.2.5
Copernicusmarine version 2.0.1
Python version 3.11.6 | packaged by conda-forge | (main, Oct 3 2023, 10:40:35) [GCC 12.3.0]
------------------------------------------------------
19:28:00 DEBUG opendrift.models.basemodel:1774: No output file is specified, neglecting export_buffer_length
19:28:00 DEBUG opendrift.models.basemodel:1892: Finalizing environment and preparing readers for simulation coverage ([-10.299913976319912, 76.86872348269901, -4.297896768919346, 78.1660207799963]) and time (2013-09-01 02:12:00 to 2013-09-01 12:12:00)
19:28:00 DEBUG opendrift.models.basemodel.environment:168: Preparing /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc for extent [-10.299913976319912, 76.86872348269901, -4.297896768919346, 78.1660207799963]
19:28:00 DEBUG opendrift.readers.basereader.structured:153: Clearing cache for reader /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc before starting new simulation
19:28:00 WARNING opendrift.readers.basereader.variables:601: Assuming time step of 1 hour for /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.readers.basereader.variables:608: Setting buffer size 3 for reader /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc, assuming a maximum average speed of 2 m/s and time span of 1:00:00
19:28:00 DEBUG opendrift.readers.basereader.variables:549: Nothing more to prepare for /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.models.basemodel.environment:168: Preparing /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc for extent [-10.299913976319912, 76.86872348269901, -4.297896768919346, 78.1660207799963]
19:28:00 DEBUG opendrift.readers.basereader.structured:153: Clearing cache for reader /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc before starting new simulation
19:28:00 WARNING opendrift.readers.basereader.variables:601: Assuming time step of 1 hour for /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.readers.basereader.variables:608: Setting buffer size 3 for reader /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc, assuming a maximum average speed of 2 m/s and time span of 1:00:00
19:28:00 DEBUG opendrift.readers.basereader.variables:549: Nothing more to prepare for /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.models.basemodel.environment:168: Preparing /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc for extent [-10.299913976319912, 76.86872348269901, -4.297896768919346, 78.1660207799963]
19:28:00 DEBUG opendrift.readers.basereader.structured:153: Clearing cache for reader /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc before starting new simulation
19:28:00 WARNING opendrift.readers.basereader.variables:601: Assuming time step of 1 hour for /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.readers.basereader.variables:608: Setting buffer size 3 for reader /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc, assuming a maximum average speed of 2 m/s and time span of 1:00:00
19:28:00 DEBUG opendrift.readers.basereader.variables:549: Nothing more to prepare for /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.models.basemodel.environment:168: Preparing global_landmask for extent [-10.299913976319912, 76.86872348269901, -4.297896768919346, 78.1660207799963]
19:28:00 DEBUG opendrift.readers.basereader.variables:549: Nothing more to prepare for global_landmask
19:28:00 DEBUG opendrift.models.basemodel:1979: Initial self.result, size Frozen({'trajectory': 1, 'time': 11})
19:28:00 INFO opendrift.models.basemodel:916: Using existing reader for land_binary_mask
19:28:00 DEBUG opendrift.models.basemodel.environment:595: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
19:28:00 DEBUG opendrift.models.basemodel.environment:597: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:601: Calling reader global_landmask
19:28:00 DEBUG opendrift.models.basemodel.environment:602: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:618: Data needed for 1 elements
19:28:00 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 1 elements
19:28:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
19:28:00 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
19:28:00 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
19:28:00 DEBUG opendrift.models.basemodel.environment:752: Obtained data for all elements.
19:28:00 DEBUG opendrift.models.basemodel.environment:765: ---------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:766: Finished processing all variable groups
19:28:00 DEBUG opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
19:28:00 DEBUG opendrift.models.basemodel.environment:893: land_binary_mask: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:895: ---------------------------------
19:28:00 INFO opendrift.models.basemodel:927: All points are in ocean
19:28:00 DEBUG opendrift.models.basemodel:871: to be seeded: 1, already seeded 0
19:28:00 DEBUG opendrift.models.basemodel:889: Released 1 new elements.
19:28:00 WARNING opendrift.models.basemodel:710: Seafloor check not being run because environment is missing. This will happen the first time the function is run but if it happens subsequently there is probably a problem.
19:28:00 DEBUG opendrift.models.basemodel:2052: ======================================================================
19:28:00 INFO opendrift.models.basemodel:2053: 2013-09-01 02:12:00 - step 1 of 10 - 1 active elements (0 deactivated)
19:28:00 DEBUG opendrift.models.basemodel:2059: 0 elements scheduled.
19:28:00 DEBUG opendrift.models.basemodel:2061: ======================================================================
19:28:00 DEBUG opendrift.models.basemodel:2070: latitude = 77.51737
19:28:00 DEBUG opendrift.models.basemodel:2075: longitude = -7.2989054
19:28:00 DEBUG opendrift.models.basemodel:2080: z = 0.0
19:28:00 DEBUG opendrift.models.basemodel:2083: ---------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:486: Discarding reader (ends before simuation is finished): /yby/B78_TEST/20130901_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.models.basemodel.environment:486: Discarding reader (ends before simuation is finished): /yby/B78_TEST/20130831_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.models.basemodel.environment:595: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:596: Variable group ['sea_floor_depth_below_sea_level', 'sea_ice_area_fraction', 'sea_ice_thickness', 'sea_water_salinity', 'sea_water_temperature', 'x_sea_water_velocity', 'sea_ice_x_velocity', 'y_sea_water_velocity', 'sea_ice_y_velocity']
19:28:00 DEBUG opendrift.models.basemodel.environment:597: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:601: Calling reader /yby/B78_TEST/20130902_dm-12km-NERSC-MODEL-TOPAZ4B-ARC-RAN.fv2.0.nc
19:28:00 DEBUG opendrift.models.basemodel.environment:602: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:607: Outside time coverage of reader.
19:28:00 DEBUG opendrift.models.basemodel.environment:595: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:596: Variable group ['land_binary_mask']
19:28:00 DEBUG opendrift.models.basemodel.environment:597: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:601: Calling reader global_landmask
19:28:00 DEBUG opendrift.models.basemodel.environment:602: ----------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:618: Data needed for 1 elements
19:28:00 DEBUG opendrift.readers.basereader.variables:752: Fetching variables from global_landmask covering 1 elements
19:28:00 DEBUG opendrift.readers.basereader.continuous:37: Fetched env-before
19:28:00 DEBUG opendrift.readers.basereader.variables:633: Checking land_binary_mask for invalid values
19:28:00 DEBUG opendrift.readers.basereader.variables:788: Reader projection is latlon - rotation of vectors is not needed.
19:28:00 DEBUG opendrift.models.basemodel.environment:752: Obtained data for all elements.
19:28:00 DEBUG opendrift.models.basemodel.environment:765: ---------------------------------------
19:28:00 DEBUG opendrift.models.basemodel.environment:766: Finished processing all variable groups
19:28:00 DEBUG opendrift.models.basemodel.environment:786: Creating empty dictionary for profiles not profided by any reader: ['x_sea_water_velocity', 'y_sea_water_velocity', 'sea_water_temperature', 'sea_water_salinity']
19:28:00 DEBUG opendrift.models.basemodel.environment:791: Using fallback value 2 for sea_water_temperature for all profiles
19:28:00 DEBUG opendrift.models.basemodel.environment:791: Using fallback value 35 for sea_water_salinity for all profiles
19:28:00 DEBUG opendrift.models.basemodel.environment:891: ------------ SUMMARY -------------
19:28:00 DEBUG opendrift.models.basemodel.environment:893: x_sea_water_velocity: nan (min) nan (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: y_sea_water_velocity: nan (min) nan (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_floor_depth_below_sea_level: 10000 (min) 10000 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_surface_x_slope: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_surface_y_slope: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: x_wind: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: y_wind: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_surface_wave_significant_height: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_surface_wave_from_direction: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_surface_wave_stokes_drift_x_velocity: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_surface_wave_stokes_drift_y_velocity: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_water_temperature: 2 (min) 2 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_water_salinity: 35 (min) 35 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_ice_area_fraction: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_ice_thickness: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_ice_x_velocity: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: sea_ice_y_velocity: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:893: land_binary_mask: 0 (min) 0 (max)
19:28:00 DEBUG opendrift.models.basemodel.environment:895: ---------------------------------
19:28:00 DEBUG opendrift.models.physics_methods:995: Calculating Hs from wind, min: 0.000000, mean: 0.000000, max: 0.000000
19:28:00 WARNING opendrift.models.basemodel:2354: Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']
19:28:00 DEBUG opendrift.models.basemodel:640: No elements hit coastline.
19:28:00 WARNING opendrift.models.basemodel:716: Seafloor check not being run because sea_surface_height is missing.
19:28:00 DEBUG opendrift.models.basemodel:1665: Added status missing_data
19:28:00 DEBUG opendrift.models.basemodel:1676: 1 elements scheduled for deactivation (missing_data)
19:28:00 DEBUG opendrift.models.basemodel:1678: (z: 0.000000 to 0.000000)
19:28:00 DEBUG opendrift.models.basemodel:1696: Removed 1 elements.
19:28:00 DEBUG opendrift.models.basemodel:1699: Removed 1 values from environment.
19:28:00 DEBUG opendrift.models.basemodel:1704: remove items from profile for z
19:28:00 DEBUG opendrift.models.basemodel:1704: remove items from profile for sea_water_temperature
19:28:00 DEBUG opendrift.models.basemodel:1704: remove items from profile for sea_water_salinity
19:28:00 DEBUG opendrift.models.basemodel:1708: Removed 1 values from environment_profiles.
19:28:00 WARNING opendrift.models.basemodel:2151: The simulation stopped before requested end time was reached.
19:28:00 INFO opendrift.models.basemodel:2153: ========================
19:28:00 INFO opendrift.models.basemodel:2154: End of simulation:
19:28:00 INFO opendrift.models.basemodel:2155: No more active or scheduled elements, quitting.
19:28:00 INFO opendrift.models.basemodel:2156: Traceback (most recent call last):
File "/home/daye/Code/OpenDrift/opendrift/opendrift/models/basemodel/__init__.py", line 2118, in run
raise ValueError(
ValueError: No more active or scheduled elements, quitting.
19:28:00 INFO opendrift.models.basemodel:2157: "Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']", 'The simulation stopped before requested end time was reached.'
19:28:00 INFO opendrift.models.basemodel:2160: ========================
Traceback (most recent call last):
File "/home/daye/Code/OpenDrift/opendrift/opendrift/models/basemodel/__init__.py", line 2118, in run
raise ValueError(
ValueError: No more active or scheduled elements, quitting.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/yby/Code/Samcot/IB#78/Topaz4/TEST.py", line 44, in <module>
o.run(duration = timedelta(hours=10.0), time_step=timedelta(hours=1.0))
File "/home/daye/Code/OpenDrift/opendrift/opendrift/models/basemodel/__init__.py", line 113, in inner
r = func(self, *args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/daye/Code/OpenDrift/opendrift/opendrift/models/basemodel/__init__.py", line 2164, in run
raise ValueError('Simulation stopped within '
ValueError: Simulation stopped within first timestep. "Missing variables: ['x_sea_water_velocity', 'y_sea_water_velocity']", 'The simulation stopped before requested end time was reached.'
