avogadrolibs
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Published
20 hours ago •
OpenChemistry
OpenChemistry
template tool doesn't actually paste template that is selected
Avogadro version: (please complete the following information from the About box):
- Avogadrolibs: 1.99.0
- Qt: 5.15.8
Desktop version: (please complete the following information):
- OS: macOS
- Version 14.4
- Compiler N/A (application from github releases page)
Describe the bug template tool pastes FeH$_6$ no matter what template is selected in "Template" panel
To Reproduce
- Run Avogadro with an empty canvas
- select template tool
- select a template, e.g. ethylene
- click on blank canvas
Expected behavior
The chosen template is pasted
Screenshots
Image of window after following directions in "To Reproduce"
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This seems like more of a documentation / UI hint thing. Click on a hydrogen atom.
The template tool started with "build up metal complexes easily":
- click to insert metal / atom with designated geometry
- click on hydrogens to attach ligand or functional groups
I agree with UI, that it needs to be more clear that this will attach a fragment to an existing atom, or replace an existing atom with a fragment. But in that case, I'd also argue that it should do nothing (or maybe give a popup error?) if you click on blank canvas space, or at least not paste a random molecule that seems to come out of nowhere (why FeH6?)
Also, putting in a single H then clicking on it with the template tool (amide selected), resulted in a crash:
-------------------------------------
Translated Report (Full Report Below)
-------------------------------------
Process: Avogadro2 [41791]
Path: /Applications/Avogadro2.app/Contents/MacOS/Avogadro2
Identifier: cc.avogadro
Version: (1.99.0)
Code Type: ARM-64 (Native)
Parent Process: launchd [1]
User ID: 503
Date/Time: 2024-03-20 10:51:11.8650 -0400
OS Version: macOS 14.4 (23E214)
Report Version: 12
Anonymous UUID: BE9A79F9-9C83-8D45-0C6B-B901FD6A37BE
Sleep/Wake UUID: F7E34876-D895-4B8F-87DE-49CF307BD38B
Time Awake Since Boot: 200000 seconds
Time Since Wake: 2294 seconds
System Integrity Protection: enabled
Crashed Thread: 0 Dispatch queue: com.apple.main-thread
Exception Type: EXC_BAD_ACCESS (SIGSEGV)
Exception Codes: KERN_INVALID_ADDRESS at 0x0000000000000000
Exception Codes: 0x0000000000000001, 0x0000000000000000
Termination Reason: Namespace SIGNAL, Code 11 Segmentation fault: 11
Terminating Process: exc handler [41791]
VM Region Info: 0 is not in any region. Bytes before following region: 4295262208
REGION TYPE START - END [ VSIZE] PRT/MAX SHRMOD REGION DETAIL
UNUSED SPACE AT START
--->
__TEXT 100048000-10014c000 [ 1040K] r-x/r-x SM=COW /Applications/Avogadro2.app/Contents/MacOS/Avogadro2
Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0 libAvogadroQtPlugins.1.99.0.dylib 0x100b11f34 Avogadro::QtPlugins::TemplateTool::atomLeftClick(QMouseEvent*) + 2552
1 libAvogadroQtPlugins.1.99.0.dylib 0x100b11f28 Avogadro::QtPlugins::TemplateTool::atomLeftClick(QMouseEvent*) + 2540
2 libAvogadroQtPlugins.1.99.0.dylib 0x100b10df4 Avogadro::QtPlugins::TemplateTool::mousePressEvent(QMouseEvent*) + 936
3 libAvogadroQtOpenGL.1.99.0.dylib 0x1005f5af8 Avogadro::QtOpenGL::GLWidget::mousePressEvent(QMouseEvent*) + 56
4 libQt5Widgets.5.15.8.dylib 0x101375e48 QWidget::event(QEvent*) + 104
5 CoreFoundation 0x19d4a5e44 __CFRunLoopDoSource0 + 176
6 CoreFoundation 0x19d4a5bb4 __CFRunLoopDoSources0 + 244
7 CoreFoundation 0x19d4a47a0 __CFRunLoopRun + 828
8 CoreFoundation 0x19d4a3e0c CFRunLoopRunSpecific + 608
9 HIToolbox 0x1a7c3f000 RunCurrentEventLoopInMode + 292
10 HIToolbox 0x1a7c3ec90 ReceiveNextEventCommon + 220
11 HIToolbox 0x1a7c3eb94 _BlockUntilNextEventMatchingListInModeWithFilter + 76
12 AppKit 0x1a0cfc970 _DPSNextEvent + 660
13 AppKit 0x1a14eedec -[NSApplication(NSEventRouting) _nextEventMatchingEventMask:untilDate:inMode:dequeue:] + 700
14 AppKit 0x1a0cefcb8 -[NSApplication run] + 476
15 libqcocoa.dylib 0x100398a64 0x10036c000 + 182884
16 dyld 0x19d03e0e0 start + 2360
Thread 1:
0 libsystem_pthread.dylib 0x19d3c1d20 start_wqthread + 0
Thread 2:
0 libsystem_pthread.dylib 0x19d3c1d20 start_wqthread + 0
Thread 3:
0 libsystem_pthread.dylib 0x19d3c1d20 start_wqthread + 0
Thread 4:: Qt bearer thread
0 libsystem_kernel.dylib 0x19d38eb70 poll + 8
1 libQt5Core.5.15.8.dylib 0x1020f5728 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 168
2 libsystem_pthread.dylib 0x19d3c1d34 thread_start + 8
Thread 5:: QNetworkAccessManager thread
0 libsystem_kernel.dylib 0x19d38eb70 poll + 8
1 libQt5Core.5.15.8.dylib 0x1020f56d0 qt_safe_poll(pollfd*, unsigned int, timespec const*) + 80
2 libsystem_pthread.dylib 0x19d3c1d34 thread_start + 8
Thread 6:: Thread (pooled)
0 libsystem_kernel.dylib 0x19d3899ec __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x19d3c755c _pthread_cond_wait + 1228
2 libQt5Core.5.15.8.dylib 0x101fb4b20 0x101f94000 + 133920
3 libsystem_pthread.dylib 0x19d3c1d34 thread_start + 8
Thread 7:: com.apple.CFSocket.private
0 libsystem_kernel.dylib 0x19d391358 __select + 8
1 CoreFoundation 0x19d4cf30c __CFSocketManager + 640
2 libsystem_pthread.dylib 0x19d3c6f94 _pthread_start + 136
3 libsystem_pthread.dylib 0x19d3c1d34 thread_start + 8
Thread 8:: Thread (pooled)
0 libsystem_kernel.dylib 0x19d3899ec __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x19d3c755c _pthread_cond_wait + 1228
2 libQt5Core.5.15.8.dylib 0x101fb4b20 0x101f94000 + 133920
3 libsystem_pthread.dylib 0x19d3c1d34 thread_start + 8
Thread 9:: Thread (pooled)
0 libsystem_kernel.dylib 0x19d3899ec __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x19d3c755c _pthread_cond_wait + 1228
2 libQt5Core.5.15.8.dylib 0x101fb4b20 0x101f94000 + 133920
3 libsystem_pthread.dylib 0x19d3c1d34 thread_start + 8
Thread 10:: Thread (pooled)
0 libsystem_kernel.dylib 0x19d3899ec __psynch_cvwait + 8
1 libsystem_pthread.dylib 0x19d3c755c _pthread_cond_wait + 1228
2 libQt5Core.5.15.8.dylib 0x101fb4b20 0x101f94000 + 133920
3 libsystem_pthread.dylib 0x19d3c1d34 thread_start + 8
Thread 11:
0 libsystem_pthread.dylib 0x19d3c1d20 start_wqthread + 0
Thread 12:: com.apple.NSEventThread
0 libsystem_kernel.dylib 0x19d3861f4 mach_msg2_trap + 8
1 libsystem_kernel.dylib 0x19d398b24 mach_msg2_internal + 80
2 libsystem_kernel.dylib 0x19d38ee34 mach_msg_overwrite + 476
3 libsystem_kernel.dylib 0x19d386578 mach_msg + 24
4 CoreFoundation 0x19d4a6058 __CFRunLoopServiceMachPort + 160
5 CoreFoundation 0x19d4a491c __CFRunLoopRun + 1208
6 CoreFoundation 0x19d4a3e0c CFRunLoopRunSpecific + 608
7 AppKit 0x1a0e25cb4 _NSEventThread + 144
8 libsystem_pthread.dylib 0x19d3c6f94 _pthread_start + 136
9 libsystem_pthread.dylib 0x19d3c1d34 thread_start + 8
Thread 13:
0 libsystem_pthread.dylib 0x19d3c1d20 start_wqthread + 0
Thread 14:
0 libsystem_pthread.dylib 0x19d3c1d20 start_wqthread + 0
Thread 0 crashed with ARM Thread State (64-bit):
x0: 0x000000016fdb5210 x1: 0x0000000000000000 x2: 0x0000000000000000 x3: 0x0000600002575160
x4: 0x0000000000000000 x5: 0x0000000000000660 x6: 0x0000600002574660 x7: 0x00000000000003a0
x8: 0x0000600002574660 x9: 0x00000000000001ff x10: 0x0000000000001140 x11: 0x00000000b80c9829
x12: 0x00000000000007fb x13: 0x00000000000007fd x14: 0x00000000b82ca08b x15: 0x000000000000008b
x16: 0x00000000b80c9829 x17: 0x00000000000ca000 x18: 0x0000000000000000 x19: 0x0000000000000000
x20: 0x0000000000000000 x21: 0x00006000027e80d8 x22: 0x0000000000000001 x23: 0x00006000027e80d8
x24: 0x00006000027e81b0 x25: 0x00006000027e81e8 x26: 0x00006000027e81e8 x27: 0x00006000027e80d0
x28: 0x00006000014a8b40 fp: 0x000000016fdb5570 lr: 0x0000000100b11f28
sp: 0x000000016fdb5060 pc: 0x0000000100b11f34 cpsr: 0x60001000
far: 0x0000000000000000 esr: 0x92000006 (Data Abort) byte read Translation fault
Binary Images:
0x10765c000 - 0x107667fff libobjc-trampolines.dylib (*) <e8a1b184-0349-3c61-a119-6543eb038317> /usr/lib/libobjc-trampolines.dylib
0x108c20000 - 0x108c6bfff libqwebp.dylib (*) <8ad749d6-061d-363c-98af-66d5c932713f> /Applications/Avogadro2.app/Contents/PlugIns/imageformats/libqwebp.dylib
0x103178000 - 0x10317bfff libqwbmp.dylib (*) <d63eab61-7d80-32db-ad26-98fb04a90134> /Applications/Avogadro2.app/Contents/PlugIns/imageformats/libqwbmp.dylib
0x1041fc000 - 0x104203fff libqsvg.dylib (*) <0e08ae90-96bd-3b4d-bb52-f1a1c09632de> /Applications/Avogadro2.app/Contents/PlugIns/imageformats/libqsvg.dylib
0x107640000 - 0x107647fff libqjpeg.dylib (*) <1b96845f-2f1b-34a3-95d3-67fd0c7bdfe9> /Applications/Avogadro2.app/Contents/PlugIns/imageformats/libqjpeg.dylib
0x108b78000 - 0x108babfff libjpeg.9.dylib (*) <4fc900b0-7f53-34c8-a1ae-8498d1bab701> /Applications/Avogadro2.app/Contents/Frameworks/libjpeg.9.dylib
0x10372c000 - 0x103733fff libqgif.dylib (*) <911aa0be-c20b-3790-aa5d-27cc632a1840> /Applications/Avogadro2.app/Contents/PlugIns/imageformats/libqgif.dylib
0x1075a4000 - 0x10760ffff com.apple.AppleMetalOpenGLRenderer (1.0) <83d94df2-aca8-3695-a3a1-bf8ca16657ac> /System/Library/Extensions/AppleMetalOpenGLRenderer.bundle/Contents/MacOS/AppleMetalOpenGLRenderer
0x107564000 - 0x107587fff libqmacstyle.dylib (*) <f5df361f-0d5d-3120-bbe8-aac07e96b9dc> /Applications/Avogadro2.app/Contents/PlugIns/styles/libqmacstyle.dylib
0x10036c000 - 0x100467fff libqcocoa.dylib (*) <271a6c0c-dd22-3807-96e6-aceb0b152a33> /Applications/Avogadro2.app/Contents/PlugIns/platforms/libqcocoa.dylib
0x100280000 - 0x1002bffff libQt5DBus.5.15.8.dylib (*) <b468d0a2-fea2-384e-82c1-dc4df908cc3d> /Applications/Avogadro2.app/Contents/Frameworks/libQt5DBus.5.15.8.dylib
0x1002e4000 - 0x100307fff libQt5PrintSupport.5.15.8.dylib (*) <37a37377-c32b-3190-8a3f-5811b6d7230e> /Applications/Avogadro2.app/Contents/Frameworks/libQt5PrintSupport.5.15.8.dylib
0x1005f0000 - 0x1005f7fff libAvogadroQtOpenGL.1.99.0.dylib (*) <f05de683-a59e-3fbb-8aba-6b1b40ba0689> /Applications/Avogadro2.app/Contents/Frameworks/libAvogadroQtOpenGL.1.99.0.dylib
0x100a18000 - 0x100d17fff libAvogadroQtPlugins.1.99.0.dylib (*) <4c9d6db5-bbef-3d5f-bcf3-98b26c978222> /Applications/Avogadro2.app/Contents/Frameworks/libAvogadroQtPlugins.1.99.0.dylib
0x100634000 - 0x100643fff libMoleQueueServerCore.dylib (*) <af259318-c9f0-38da-9d47-a3bd69dec687> /Applications/Avogadro2.app/Contents/Frameworks/libMoleQueueServerCore.dylib
0x10065c000 - 0x100667fff libMoleQueueClient.dylib (*) <b2dfaa34-bfa0-31dd-9671-5611aa6f48b5> /Applications/Avogadro2.app/Contents/Frameworks/libMoleQueueClient.dylib
0x1006ac000 - 0x1006bffff libAvogadroVtk.1.99.0.dylib (*) <3c709a90-7583-387d-a06f-5e50697d8379> /Applications/Avogadro2.app/Contents/Frameworks/libAvogadroVtk.1.99.0.dylib
0x10060c000 - 0x10060ffff libQt5Concurrent.5.15.8.dylib (*) <eaa074a4-2bdb-3f02-a7b5-a59e6944e755> /Applications/Avogadro2.app/Contents/Frameworks/libQt5Concurrent.5.15.8.dylib
0x1007e0000 - 0x10088bfff libQt5Network.5.15.8.dylib (*) <93795721-937c-31b0-963b-6655e689dcde> /Applications/Avogadro2.app/Contents/Frameworks/libQt5Network.5.15.8.dylib
0x1008e4000 - 0x100957fff libAvogadroQtGui.1.99.0.dylib (*) <ab1937a1-5b21-305d-a2c8-3ab4b1bb4493> /Applications/Avogadro2.app/Contents/Frameworks/libAvogadroQtGui.1.99.0.dylib
0x100e24000 - 0x100ebffff libAvogadroIO.1.99.0.dylib (*) <9a17f4f2-fc8a-31a7-b48c-45723913b682> /Applications/Avogadro2.app/Contents/Frameworks/libAvogadroIO.1.99.0.dylib
0x100750000 - 0x100783fff libvtkGUISupportQt-9.2.9.2.0.dylib (*) <0c21aacb-7f4d-376d-96be-974863cda642> /Applications/Avogadro2.app/Contents/Frameworks/libvtkGUISupportQt-9.2.9.2.0.dylib
0x1009ac000 - 0x1009d3fff libQt5OpenGL.5.15.8.dylib (*) <a0eafb30-0f57-3372-8ac0-c7dbdbc77a5f> /Applications/Avogadro2.app/Contents/Frameworks/libQt5OpenGL.5.15.8.dylib
0x101344000 - 0x10160ffff libQt5Widgets.5.15.8.dylib (*) <e7359903-e88c-32a4-8571-03129fe25b71> /Applications/Avogadro2.app/Contents/Frameworks/libQt5Widgets.5.15.8.dylib
0x101788000 - 0x1019f7fff libQt5Gui.5.15.8.dylib (*) <a742ecbe-93bf-3e0f-ac80-b21f6df0530d> /Applications/Avogadro2.app/Contents/Frameworks/libQt5Gui.5.15.8.dylib
0x101f94000 - 0x102337fff libQt5Core.5.15.8.dylib (*) <e0bb6926-59d2-3e08-80a7-c092ca057d67> /Applications/Avogadro2.app/Contents/Frameworks/libQt5Core.5.15.8.dylib
0x100f04000 - 0x100f3ffff libAvogadroRendering.1.99.0.dylib (*) <9895fb1e-9441-3a58-a624-de3012ab70c7> /Applications/Avogadro2.app/Contents/Frameworks/libAvogadroRendering.1.99.0.dylib
0x10110c000 - 0x10125bfff libAvogadroCore.1.99.0.dylib (*) <9fce521f-2187-3045-a5c4-25c865053549> /Applications/Avogadro2.app/Contents/Frameworks/libAvogadroCore.1.99.0.dylib
0x101008000 - 0x10106bfff libvtkRenderingVolumeOpenGL2-9.2.9.2.0.dylib (*) <3d881ebc-157c-31b3-94e0-b3631e4ead3e> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingVolumeOpenGL2-9.2.9.2.0.dylib
0x100f68000 - 0x100f9bfff libvtkImagingMath-9.2.9.2.0.dylib (*) <032bac1e-308a-3eb7-8538-5de7998dd115> /Applications/Avogadro2.app/Contents/Frameworks/libvtkImagingMath-9.2.9.2.0.dylib
0x101cdc000 - 0x101e3bfff libvtkChartsCore-9.2.9.2.0.dylib (*) <804adec2-c4b3-35de-a63e-81060024f3e1> /Applications/Avogadro2.app/Contents/Frameworks/libvtkChartsCore-9.2.9.2.0.dylib
0x10067c000 - 0x100683fff libvtkViewsContext2D-9.2.9.2.0.dylib (*) <a9144073-232e-3a55-b613-dbb7938a6e4f> /Applications/Avogadro2.app/Contents/Frameworks/libvtkViewsContext2D-9.2.9.2.0.dylib
0x10070c000 - 0x10071ffff libvtkViewsCore-9.2.9.2.0.dylib (*) <f614da7c-0bed-38ea-8c7a-1943624ded3b> /Applications/Avogadro2.app/Contents/Frameworks/libvtkViewsCore-9.2.9.2.0.dylib
0x102654000 - 0x10279ffff libvtkInteractionWidgets-9.2.9.2.0.dylib (*) <e2dfe81c-a2ee-3914-8608-1e26ee5b1a63> /Applications/Avogadro2.app/Contents/Frameworks/libvtkInteractionWidgets-9.2.9.2.0.dylib
0x1010a8000 - 0x1010c7fff libvtkInteractionStyle-9.2.9.2.0.dylib (*) <9430d362-47fa-34aa-ad25-9785dd2ffe1d> /Applications/Avogadro2.app/Contents/Frameworks/libvtkInteractionStyle-9.2.9.2.0.dylib
0x102b34000 - 0x102d63fff libvtkRenderingVolume-9.2.9.2.0.dylib (*) <a413f958-ecf8-3ca2-b890-05bf7d1eb9a6> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingVolume-9.2.9.2.0.dylib
0x1012b4000 - 0x1012dbfff libvtkRenderingContextOpenGL2-9.2.9.2.0.dylib (*) <56886719-49af-30cb-b27f-359689999607> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingContextOpenGL2-9.2.9.2.0.dylib
0x1012fc000 - 0x10131bfff libvtkRenderingContext2D-9.2.9.2.0.dylib (*) <3d54ae87-1c03-3c2c-984c-811ddc681a0a> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingContext2D-9.2.9.2.0.dylib
0x101bcc000 - 0x101bf3fff libvtkRenderingFreeType-9.2.9.2.0.dylib (*) <73e1eb0e-c1dc-3eed-87fb-36a6c5d5d1b1> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingFreeType-9.2.9.2.0.dylib
0x101e9c000 - 0x101f1ffff libvtkfreetype-9.2.9.2.0.dylib (*) <c86b74b4-ec24-391a-bc76-5c11d2649b59> /Applications/Avogadro2.app/Contents/Frameworks/libvtkfreetype-9.2.9.2.0.dylib
0x100fbc000 - 0x100fc7fff libvtkDomainsChemistryOpenGL2-9.2.9.2.0.dylib (*) <f6ecbc47-e17b-3ba8-87ec-842e7dfaff26> /Applications/Avogadro2.app/Contents/Frameworks/libvtkDomainsChemistryOpenGL2-9.2.9.2.0.dylib
0x102898000 - 0x102a03fff libvtkRenderingOpenGL2-9.2.9.2.0.dylib (*) <84a00f10-f624-37d8-9455-46ff10f93de9> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingOpenGL2-9.2.9.2.0.dylib
0x1006dc000 - 0x1006e3fff libvtkRenderingHyperTreeGrid-9.2.9.2.0.dylib (*) <1cb07f31-41d3-3703-8af1-5a052c3186cd> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingHyperTreeGrid-9.2.9.2.0.dylib
0x1031f4000 - 0x1033e3fff libvtkImagingCore-9.2.9.2.0.dylib (*) <53c678ff-1fdd-390d-8de5-dd7d95938f34> /Applications/Avogadro2.app/Contents/Frameworks/libvtkImagingCore-9.2.9.2.0.dylib
0x101b1c000 - 0x101b27fff libvtkRenderingUI-9.2.9.2.0.dylib (*) <1f62269e-fe4d-35ea-a06a-136a335bba3e> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingUI-9.2.9.2.0.dylib
0x102508000 - 0x1025b3fff libvtkglew-9.2.9.2.0.dylib (*) <6fa5dde5-06d1-395c-b382-bb91083be983> /Applications/Avogadro2.app/Contents/Frameworks/libvtkglew-9.2.9.2.0.dylib
0x101c7c000 - 0x101ca3fff libvtkDomainsChemistry-9.2.9.2.0.dylib (*) <1e60dab5-b1a1-346d-8142-9fe2027f5a7f> /Applications/Avogadro2.app/Contents/Frameworks/libvtkDomainsChemistry-9.2.9.2.0.dylib
0x103458000 - 0x10355ffff libvtkRenderingCore-9.2.9.2.0.dylib (*) <7300b269-72d6-304f-a32c-b28530776e23> /Applications/Avogadro2.app/Contents/Frameworks/libvtkRenderingCore-9.2.9.2.0.dylib
0x102f90000 - 0x10300ffff libvtkFiltersSources-9.2.9.2.0.dylib (*) <8f9dc4ae-2e42-3067-b4cf-d65a3bbf5ca3> /Applications/Avogadro2.app/Contents/Frameworks/libvtkFiltersSources-9.2.9.2.0.dylib
0x103aa4000 - 0x103d57fff libvtkFiltersGeneral-9.2.9.2.0.dylib (*) <d89480db-29f2-3549-bee6-71ae77357e4f> /Applications/Avogadro2.app/Contents/Frameworks/libvtkFiltersGeneral-9.2.9.2.0.dylib
0x104858000 - 0x104df7fff libvtkFiltersCore-9.2.9.2.0.dylib (*) <76009a49-eb8b-3b28-9be3-93581e7cba70> /Applications/Avogadro2.app/Contents/Frameworks/libvtkFiltersCore-9.2.9.2.0.dylib
0x103060000 - 0x1030bffff libvtkIOLegacy-9.2.9.2.0.dylib (*) <75151c5b-a9a8-3963-b53e-11baf19c991c> /Applications/Avogadro2.app/Contents/Frameworks/libvtkIOLegacy-9.2.9.2.0.dylib
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0x102484000 - 0x1024bffff libvtkIOCore-9.2.9.2.0.dylib (*) <96aea8df-f68a-3d64-ac2d-07c95f2a291d> /Applications/Avogadro2.app/Contents/Frameworks/libvtkIOCore-9.2.9.2.0.dylib
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0x107294000 - 0x1073c3fff libvtkIOImage-9.2.9.2.0.dylib (*) <b5596ffd-4186-396c-8fc8-fba2d7de17bb> /Applications/Avogadro2.app/Contents/Frameworks/libvtkIOImage-9.2.9.2.0.dylib
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0x19d428000 - 0x19d900fff com.apple.CoreFoundation (6.9) <33908a83-098f-3437-973e-fb848c4f39df> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
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0x19d038000 - 0x19d0c09db dyld (*) <8e1e5ee2-f89a-33a7-bb0a-74bdc06b7828> /usr/lib/dyld
0x0 - 0xffffffffffffffff ??? (*) <00000000-0000-0000-0000-000000000000> ???
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Putting in a CH4 and clicking on one of the hydrogens with the template tool worked nicely.
Thanks for the single-H report. I'll hunt down that crash. I think the problem is that it's trying to find the atom the hydrogen is attached to.
But in that case, I'd also argue that it should do nothing (or maybe give a popup error?) if you click on blank canvas space, or at least not paste a random molecule that seems to come out of nowhere (why FeH6?)
I tested it a little myself and the reason that FeH6 appeared in your case is because that was what was currently selected under the "Centers" tab. Equally, if you change to e.g. nickel, then go back to the ligands or groups tab, then click empty space, a nickel atom will appear.
I agree with @bernstei that from a UX perspective new metal centres shouldn't be created when the Ligands or Groups tabs are open, only when the Centers tab is the currently selected one. If Ligands or Groups are selected and one clicks on empty space rather than a H atom, nothing should appear at all.
I've also put some changes in the docs to try and make it as clear as possible that the ligands and groups work by replacing existing H atoms and they can't be placed into empty space.