[backend] Improve performance by better targeting indices for query

[richard-julien]

[backend] Improve performance by better targeting indices for query

• Listing are now indices computed (elPaginate)
• Refactor checkfileAccess has really unefficient

[codecov[bot]]

Codecov Report

Attention: Patch coverage is 70.31250% with 19 lines in your changes missing coverage. Please review.

Project coverage is 66.42%. Comparing base (11067c2) to head (5f2fea2). Report is 5 commits behind head on master.

Files with missing lines	Patch %	Lines
...opencti-graphql/src/graphql/subscriptionWrapper.js	0.00%	2 Missing :warning:
...c/modules/entitySetting/entitySetting-resolvers.ts	0.00%	1 Missing :warning:
...gerConfiguration/managerConfiguration-resolvers.ts	0.00%	1 Missing :warning:
...raphql/src/modules/workspace/workspace-resolver.ts	0.00%	1 Missing :warning:
...opencti-graphql/src/resolvers/externalReference.js	0.00%	1 Missing :warning:
...ti-platform/opencti-graphql/src/resolvers/group.js	0.00%	1 Missing :warning:
...rm/opencti-graphql/src/resolvers/internalObject.js	0.00%	1 Missing :warning:
...rm/opencti-graphql/src/resolvers/killChainPhase.js	0.00%	1 Missing :warning:
...ti-platform/opencti-graphql/src/resolvers/label.js	0.00%	1 Missing :warning:
...opencti-graphql/src/resolvers/markingDefinition.js	0.00%	1 Missing :warning:
... and 8 more

Additional details and impacted files

@@            Coverage Diff             @@
##           master    #8615      +/-   ##
==========================================
+ Coverage   66.29%   66.42%   +0.12%     
==========================================
  Files         597      597              
  Lines       60976    61183     +207     
  Branches     6266     6274       +8     
==========================================
+ Hits        40427    40640     +213     
+ Misses      20549    20543       -6     

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[Kedae]

Linked to #8125