nPhase on one chromosome

[elsasverris]

Hi, I am working on tetraploid potato and trying to run nPhase on my dataset, but as you mention yourself it is very time consuming and I had to terminate the process after running it for 8 days. I was wondering if there is any way to parallelize the process, for example to run it one chromosome at a time like you present in your paper - though I haven't figured out how to do so. Is there an option in the algorithm or have you just subset the dataset before running the algorithm? Best regards, Elsa