Omar Abou Saada

icon location France icon location Bioinformatics PhD

Results 34 comments of Omar Abou Saada

nPhase is too slow/memory intensive

Note that as of v1.2.0 several optimization steps have been implemented, including parallelization of some steps, though more can always be done.

nPhase needs a guide/tutorial for working on large/very heterozygous genomes

Hi, Those are some really large files, I imagine you have very high coverage? Unfortunately this will require you to make some manual modifications to reduce the computational burden. My...

HiFi reads

Hello, If you mean PacBio HiFi reads, I've never worked with PacBio data before so I'm not familiar with how the data looks - but if it's a situation where...

HiFi reads

If you have a very contiguous _de novo_ assembly, I would probably try to use that file as the reference. But I think you're saying that you have an already...