Individual docker scripts

[nedvedba]

PR Description

This PR serves to introduce two scripts that will create the individual container scripts needed to run the application in production.

Tasks

• [ ] - A description of the PR has been provided, and a diagram included if it is a new feature.
• [ ] - Formatter has been run
• [ ] - CHANGELOG comment has been added
• [ ] - Labels have been assigned to the pr
• [ ] - A reviewer has been added
• [ ] - A user has been assigned to work on the pr
• [ ] - If new feature a unit test has been added

Summary by Sourcery

This pull request introduces scripts to generate individual Docker container scripts for metadata and repository services, and enhances the generate_datafed.sh script to support specifying the database port.

New Features:

• Introduces two new scripts, generate_metadata_container_scripts.sh and generate_repo_container_scripts.sh, to generate individual container scripts for running the application in production.
• generate_metadata_container_scripts.sh creates scripts for managing ArangoDB, DataFed Core, DataFed Web, and Nginx containers, including creation, stopping, and removal.
• generate_repo_container_scripts.sh creates scripts for managing DataFed Repo and GCS containers, including creation, stopping, and removal.

Enhancements:

• The generate_datafed.sh script now includes an option to specify the database port via the DATAFED_DATABASE_PORT environment variable.

[sourcery-ai[bot]]

Reviewer's Guide by Sourcery

This PR introduces two new scripts, generate_metadata_container_scripts.sh and generate_repo_container_scripts.sh, to create individual container scripts for running the application in production. It also adds DATAFED_DATABASE_PORT to the datafed.sh config file.

No diagrams generated as the changes look simple and do not need a visual representation.

File-Level Changes

Change	Details	Files
Added a script to generate container scripts for the metadata server.	Added a script that takes in a docker tag and backup directory and generates scripts to run, stop, and remove arango, core, web, and nginx containers. The generated scripts are placed in the DATAFED_INSTALL_PATH/scripts directory. The script includes options for setting the docker tag and backup directory via command line arguments or environment variables.	scripts/generate_metadata_container_scripts.sh
Added a script to generate container scripts for the repository server.	Added a script that takes in a docker tag, IP address, repo domain, and optional repo volume mounts and generates scripts to run, stop, and remove repo and gcs containers. The generated scripts are placed in the DATAFED_INSTALL_PATH/scripts directory. The script includes options for setting the docker tag, IP address, repo domain, and repo volume mounts via command line arguments or environment variables.	scripts/generate_repo_container_scripts.sh
Added DATAFED_DATABASE_PORT to the datafed.sh config file.	Added logic to check if the DATAFED_DATABASE_PORT environment variable is set, and if not, defaults to 8529. Exported the DATAFED_DATABASE_PORT variable.	scripts/generate_datafed.sh

---

Tips and commands

Interacting with Sourcery

• Trigger a new review: Comment @sourcery-ai review on the pull request.
• Continue discussions: Reply directly to Sourcery's review comments.
• Generate a GitHub issue from a review comment: Ask Sourcery to create an issue from a review comment by replying to it. You can also reply to a review comment with @sourcery-ai issue to create an issue from it.
• Generate a pull request title: Write @sourcery-ai anywhere in the pull request title to generate a title at any time. You can also comment @sourcery-ai title on the pull request to (re-)generate the title at any time.
• Generate a pull request summary: Write @sourcery-ai summary anywhere in the pull request body to generate a PR summary at any time exactly where you want it. You can also comment @sourcery-ai summary on the pull request to (re-)generate the summary at any time.
• Generate reviewer's guide: Comment @sourcery-ai guide on the pull request to (re-)generate the reviewer's guide at any time.
• Resolve all Sourcery comments: Comment @sourcery-ai resolve on the pull request to resolve all Sourcery comments. Useful if you've already addressed all the comments and don't want to see them anymore.
• Dismiss all Sourcery reviews: Comment @sourcery-ai dismiss on the pull request to dismiss all existing Sourcery reviews. Especially useful if you want to start fresh with a new review - don't forget to comment @sourcery-ai review to trigger a new review!
• Generate a plan of action for an issue: Comment @sourcery-ai plan on an issue to generate a plan of action for it.

Customizing Your Experience

Access your dashboard to:

• Enable or disable review features such as the Sourcery-generated pull request summary, the reviewer's guide, and others.
• Change the review language.
• Add, remove or edit custom review instructions.
• Adjust other review settings.

Getting Help

• Contact our support team for questions or feedback.
• Visit our documentation for detailed guides and information.
• Keep in touch with the Sourcery team by following us on X/Twitter, LinkedIn or GitHub.

[AronPerez]

https://github.com/ORNL/DataFed/pull/974

[AronPerez]

Dependant on https://github.com/ORNL/DataFed/pull/1336