OPM
Compiled PyPI packages for macOS and Windows?
Hi,
I tried installing the opm Python package, but it wasn't found on macOS. I noticed there are only precompiled binaries for linux, and no source distribution.
Would it be possible to create binaries (wheels) for macOS and Windows and/or include a source distribution, os that other platforms may compile it from source?
I tried compiling it manually, but ran into some problems.
Disclaimer: the python packages do not see as much love and care as they should; that is unfortunate since "everyone" agrees having good Python packages is a good thing - but time is limited and so on.
I noticed there are only precompiled binaries for linux,
Yes - that is the case. If people contribute binary wheels for macOS that is all the rage, but it not something we will do as we speak. opm-common as a whole does not build on Windows (I think ...) although the necessary changes are probably very small.
and no source distribution
Well - I guess that is possible, but again competance and time ....
I tried compiling it manually, but ran into some problems.
Please provide more details here - this we should be able to assist you with.
opm-common as a whole does not build on Windows (I think ...) although the necessary changes are probably very small.
True, but these days there is WSL (windows subsystem for linux), which installs/compiles all repo's including opm-simulators and python-bindings natively on windows. Hence, the need for explicitly supporting the microsoft compiler toolchain is debatable.
Thanks for getting back to me,
The first issue I was having was that the option -fopenmp in the generated setup.py caused the compilation to fail; it was unable to find OpenMP, and I was unable to figure out how I could specify it (the path from brew --prefix libomp).
for reference, the commands I ran:
brew install boost libomp
git clone [email protected]:OPM/opm-common.git
cd opm-common
cmake \
-DPYTHON_EXECUTABLE=$(which python) \
-DOPM_ENABLE_PYTHON=ON \
-DBOOST_INCLUDEDIR=$(brew --prefix boost)/include \
-DBOOST_LIBRARYDIR=$(brew --prefix boost)/lib \
.
make -j 4
This failed with clang: error: unsupported option '-fopenmp'
Full output from `make -j4`
Scanning dependencies of target genkw
[ 0%] Built target datafiles
[ 0%] Updating version information
[ 0%] Built target copy_python
[ 0%] Built target update-version
[ 0%] Building CXX object CMakeFiles/genkw.dir/src/opm/json/JsonObject.cpp.o
[ 0%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Deck/DeckTree.cpp.o
[ 0%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/createDefaultKeywordList.cpp.o
[ 0%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Deck/UDAValue.cpp.o
[ 0%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Deck/DeckValue.cpp.o
[ 1%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Deck/Deck.cpp.o
[ 1%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Deck/DeckItem.cpp.o
[ 1%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Deck/DeckKeyword.cpp.o
[ 1%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Deck/DeckRecord.cpp.o
[ 1%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Deck/DeckOutput.cpp.o
[ 1%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Generator/KeywordGenerator.cpp.o
[ 2%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Generator/KeywordLoader.cpp.o
[ 2%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/ErrorGuard.cpp.o
[ 2%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/ParseContext.cpp.o
[ 2%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/ParserEnums.cpp.o
[ 2%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/ParserItem.cpp.o
[ 2%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/ParserKeyword.cpp.o
[ 2%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/ParserRecord.cpp.o
[ 3%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/raw/RawKeyword.cpp.o
[ 3%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/raw/RawRecord.cpp.o
[ 3%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Parser/raw/StarToken.cpp.o
[ 3%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Units/Dimension.cpp.o
[ 3%] Building CXX object CMakeFiles/genkw.dir/src/opm/parser/eclipse/Units/UnitSystem.cpp.o
[ 3%] Building CXX object CMakeFiles/genkw.dir/src/opm/common/utility/OpmInputError.cpp.o
[ 3%] Building CXX object CMakeFiles/genkw.dir/src/opm/common/OpmLog/OpmLog.cpp.o
[ 4%] Building CXX object CMakeFiles/genkw.dir/src/opm/common/OpmLog/Logger.cpp.o
[ 4%] Building CXX object CMakeFiles/genkw.dir/src/opm/common/OpmLog/StreamLog.cpp.o
[ 4%] Building CXX object CMakeFiles/genkw.dir/src/opm/common/OpmLog/LogBackend.cpp.o
[ 4%] Building CXX object CMakeFiles/genkw.dir/src/opm/common/OpmLog/LogUtil.cpp.o
[ 4%] Building C object CMakeFiles/genkw.dir/external/cjson/cJSON.c.o
[ 4%] Linking CXX executable bin/genkw
[ 4%] Built target genkw
[ 4%] Generating tmp_gen/ParserKeywords/A.cpp, tmp_gen/ParserKeywords/B.cpp, tmp_gen/ParserKeywords/C.cpp, tmp_gen/ParserKeywords/D.cpp, tmp_gen/ParserKeywords/E.cpp, tmp_gen/ParserKeywords/F.cpp, tmp_gen/ParserKeywords/G.cpp, tmp_gen/ParserKeywords/H.cpp, tmp_gen/ParserKeywords/I.cpp, tmp_gen/ParserKeywords/J.cpp, tmp_gen/ParserKeywords/K.cpp, tmp_gen/ParserKeywords/L.cpp, tmp_gen/ParserKeywords/M.cpp, tmp_gen/ParserKeywords/N.cpp, tmp_gen/ParserKeywords/O.cpp, tmp_gen/ParserKeywords/P.cpp, tmp_gen/ParserKeywords/Q.cpp, tmp_gen/ParserKeywords/R.cpp, tmp_gen/ParserKeywords/S.cpp, tmp_gen/ParserKeywords/T.cpp, tmp_gen/ParserKeywords/U.cpp, tmp_gen/ParserKeywords/V.cpp, tmp_gen/ParserKeywords/W.cpp, tmp_gen/ParserKeywords/X.cpp, tmp_gen/ParserKeywords/Y.cpp, tmp_gen/ParserKeywords/Z.cpp, tmp_gen/ParserInit.cpp, tmp_gen/TestKeywords.cpp, tmp_gen/builtin_pybind11.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/A.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/B.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/C.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/D.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/E.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/F.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/G.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/H.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/I.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/J.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/K.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/L.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/M.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/N.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/O.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/P.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/Q.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/R.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/S.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/T.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/U.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/V.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/W.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/X.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/Y.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/ParserKeywords/Z.cpp
Updated init file written to /Users/***/opm-common/tmp_gen/ParserInit.cpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/A.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/B.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/C.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/D.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/E.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/F.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/G.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/H.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/I.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/J.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/K.hpp
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Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/M.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/N.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/O.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/P.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/Q.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/R.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/S.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/T.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/U.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/V.hpp
Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/W.hpp
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Updated header file written to /Users/***/opm-common/tmp_gen/include/opm/parser/eclipse/Parser/ParserKeywords/Builtin.hpp
Writing file: /Users/***/opm-common/tmp_gen/builtin_pybind11.cpp
Updated source file written to /Users/***/opm-common/tmp_gen/builtin_pybind11.cpp
[ 4%] Generating ParserKeywords/A.cpp, ParserKeywords/B.cpp, ParserKeywords/C.cpp, ParserKeywords/D.cpp, ParserKeywords/E.cpp, ParserKeywords/F.cpp, ParserKeywords/G.cpp, ParserKeywords/H.cpp, ParserKeywords/I.cpp, ParserKeywords/J.cpp, ParserKeywords/K.cpp, ParserKeywords/L.cpp, ParserKeywords/M.cpp, ParserKeywords/N.cpp, ParserKeywords/O.cpp, ParserKeywords/P.cpp, ParserKeywords/Q.cpp, ParserKeywords/R.cpp, ParserKeywords/S.cpp, ParserKeywords/T.cpp, ParserKeywords/U.cpp, ParserKeywords/V.cpp, ParserKeywords/W.cpp, ParserKeywords/X.cpp, ParserKeywords/Y.cpp, ParserKeywords/Z.cpp, TestKeywords.cpp, ParserInit.cpp, python/cxx/builtin_pybind11.cpp
Scanning dependencies of target opmcommon
[ 4%] Building CXX object CMakeFiles/opmcommon.dir/ParserKeywords/X.cpp.o
[ 4%] Building CXX object CMakeFiles/opmcommon.dir/python/cxx/builtin_pybind11.cpp.o
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[ 48%] Built target opmcommon
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NOTE: please install ccache for faster compilation of python bindings.
/Users/***/<target>/venv/lib/python3.8/site-packages/setuptools/dist.py:484: UserWarning: Normalizing '2022.04' to '2022.4'
warnings.warn(tmpl.format(**locals()))
running build
running build_py
running egg_info
writing opm.egg-info/PKG-INFO
writing dependency_links to opm.egg-info/dependency_links.txt
writing top-level names to opm.egg-info/top_level.txt
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running build_ext
building 'opm.libopmcommon_python' extension
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -iwithsysroot/System/Library/Frameworks/System.framework/PrivateHeaders -iwithsysroot/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/Headers -arch arm64 -arch x86_64 -Werror=implicit-function-declaration -UNDEBUG -I/Users/***/opm-common/python/pybind11/include -I/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8 -I/Users/***/opm-common -I/Users/***/opm-common/external/fmtlib/include -I/Users/***/opm-common/external/fmtlib/include -I/Users/***/opm-common/external/cjson -I/Users/***/opm-common/include -I/Users/***/opm-common -I/usr/local/include -I/usr/local/opt/boost/include -I/Users/***/<target>/venv/include -I/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8 -c cxx/unit_system.cpp -o build/temp.macosx-10.14-x86_64-3.8/cxx/unit_system.o -std=c++17 -fopenmp -DFMT_HEADER_ONLY
clang: error: unsupported option '-fopenmp'
clang: error: unsupported option '-fopenmp'
error: command 'clang' failed with exit status 1
make[2]: *** [python/opm/libopmcommon_python.cpython-38-darwin.so] Error 1
make[1]: *** [CMakeFiles/opmcommon_python.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
In file included from /Users/***/opm-common/tests/test_EInit.cpp:24:
In file included from /usr/local/opt/boost/include/boost/test/unit_test.hpp:18:
In file included from /usr/local/opt/boost/include/boost/test/test_tools.hpp:46:
/usr/local/opt/boost/include/boost/test/tools/old/impl.hpp:107:17: warning: comparison of integers of different signs: 'const unsigned long' and 'const int' [-Wsign-compare]
return left == right;
~~~~ ^ ~~~~~
/usr/local/opt/boost/include/boost/test/tools/old/impl.hpp:130:16: note: in instantiation of function template specialization 'boost::test_tools::tt_detail::equal_impl<unsigned long, int>' requested here
return equal_impl( left, right );
^
/usr/local/opt/boost/include/boost/test/tools/old/impl.hpp:145:16: note: in instantiation of function template specialization 'boost::test_tools::tt_detail::equal_impl_frwd::call_impl<unsigned long, int>' requested here
return call_impl( left, right, left_is_array() );
^
/usr/local/opt/boost/include/boost/test/tools/old/impl.hpp:92:50: note: in instantiation of function template specialization 'boost::test_tools::tt_detail::equal_impl_frwd::operator()<unsigned long, int>' requested here
BOOST_PP_REPEAT( BOOST_TEST_MAX_PREDICATE_ARITY, IMPL_FRWD, _ )
^
/usr/local/opt/boost/include/boost/preprocessor/repetition/repeat.hpp:30:26: note: expanded from macro 'BOOST_PP_REPEAT'
# define BOOST_PP_REPEAT BOOST_PP_CAT(BOOST_PP_REPEAT_, BOOST_PP_AUTO_REC(BOOST_PP_REPEAT_P, 4))
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:22:32: note: expanded from macro 'BOOST_PP_CAT'
# define BOOST_PP_CAT(a, b) BOOST_PP_CAT_I(a, b)
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:29:34: note: expanded from macro 'BOOST_PP_CAT_I'
# define BOOST_PP_CAT_I(a, b) a ## b
^
<scratch space>:169:1: note: expanded from here
BOOST_PP_REPEAT_1
^
/Users/***/opm-common/tests/test_EInit.cpp:239:5: note: in instantiation of function template specialization 'boost::test_tools::tt_detail::check_frwd<boost::test_tools::tt_detail::equal_impl_frwd, unsigned long, int>' requested here
BOOST_CHECK_EQUAL(fipnum_global.size(), 30);
^
/usr/local/opt/boost/include/boost/test/tools/old/interface.hpp:154:45: note: expanded from macro 'BOOST_CHECK_EQUAL'
#define BOOST_CHECK_EQUAL( L, R ) BOOST_TEST_TOOL_IMPL( 0, \
^
/usr/local/opt/boost/include/boost/test/tools/old/interface.hpp:67:47: note: expanded from macro 'BOOST_TEST_TOOL_IMPL'
BOOST_PP_IF( frwd_type, report_assertion, check_frwd ) ( \
^
In file included from /Users/***/opm-common/tests/test_ExtESmry.cpp:26:
In file included from /usr/local/opt/boost/include/boost/test/unit_test.hpp:18:
In file included from /usr/local/opt/boost/include/boost/test/test_tools.hpp:46:
/usr/local/opt/boost/include/boost/test/tools/old/impl.hpp:107:17: warning: comparison of integers of different signs: 'const unsigned long' and 'const int' [-Wsign-compare]
return left == right;
~~~~ ^ ~~~~~
/usr/local/opt/boost/include/boost/test/tools/old/impl.hpp:130:16: note: in instantiation of function template specialization 'boost::test_tools::tt_detail::equal_impl<unsigned long, int>' requested here
return equal_impl( left, right );
^
/usr/local/opt/boost/include/boost/test/tools/old/impl.hpp:145:16: note: in instantiation of function template specialization 'boost::test_tools::tt_detail::equal_impl_frwd::call_impl<unsigned long, int>' requested here
return call_impl( left, right, left_is_array() );
^
/usr/local/opt/boost/include/boost/test/tools/old/impl.hpp:92:50: note: in instantiation of function template specialization 'boost::test_tools::tt_detail::equal_impl_frwd::operator()<unsigned long, int>' requested here
BOOST_PP_REPEAT( BOOST_TEST_MAX_PREDICATE_ARITY, IMPL_FRWD, _ )
^
/usr/local/opt/boost/include/boost/preprocessor/repetition/repeat.hpp:30:26: note: expanded from macro 'BOOST_PP_REPEAT'
# define BOOST_PP_REPEAT BOOST_PP_CAT(BOOST_PP_REPEAT_, BOOST_PP_AUTO_REC(BOOST_PP_REPEAT_P, 4))
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:22:32: note: expanded from macro 'BOOST_PP_CAT'
# define BOOST_PP_CAT(a, b) BOOST_PP_CAT_I(a, b)
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:29:34: note: expanded from macro 'BOOST_PP_CAT_I'
# define BOOST_PP_CAT_I(a, b) a ## b
^
<scratch space>:107:1: note: expanded from here
BOOST_PP_REPEAT_1
^
/Users/***/opm-common/tests/test_ExtESmry.cpp:167:5: note: in instantiation of function template specialization 'boost::test_tools::tt_detail::check_frwd<boost::test_tools::tt_detail::equal_impl_frwd, unsigned long, int>' requested here
BOOST_CHECK_EQUAL(ntsteps, 123);
^
/usr/local/opt/boost/include/boost/test/tools/old/interface.hpp:154:45: note: expanded from macro 'BOOST_CHECK_EQUAL'
#define BOOST_CHECK_EQUAL( L, R ) BOOST_TEST_TOOL_IMPL( 0, \
^
/usr/local/opt/boost/include/boost/test/tools/old/interface.hpp:67:47: note: expanded from macro 'BOOST_TEST_TOOL_IMPL'
BOOST_PP_IF( frwd_type, report_assertion, check_frwd ) ( \
^
1 warning generated.
[ 49%] Linking CXX executable bin/test_ExtESmry
[ 49%] Built target test_ExtESmry
1 warning generated.
[ 49%] Linking CXX executable bin/test_EInit
[ 49%] Built target test_EInit
[ 49%] Linking CXX executable bin/test_ERst
[ 49%] Built target test_ERst
make: *** [all] Error 2
If I remove -fopenmp from setup.py (e.g. sed -i '' s/-fopenmp//g python/setup.py), and then run make -j4 again, I get another error
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
Full output after removing `-fopenmp` from `setup.py`
``` [ 0%] Built target datafiles [ 0%] Updating version information [ 4%] Built target genkw [ 4%] Built target copy_python [ 4%] Built target update-version [ 48%] Built target opmcommon [ 48%] Building python bindings at python/opm/libopmcommon_python.cpython-38-darwin.so [ 48%] Built target test_EInit [ 48%] Built target test_ERst [ 49%] Built target test_ExtESmry Scanning dependencies of target test_EclIO Scanning dependencies of target test_EclFilesComparator Scanning dependencies of target rewriteEclFile [ 49%] Building CXX object CMakeFiles/rewriteEclFile.dir/test_util/rewriteEclFile.cpp.o [ 49%] Building CXX object CMakeFiles/test_EclIO.dir/tests/test_EclIO.cpp.o [ 49%] Building CXX object CMakeFiles/test_EclFilesComparator.dir/tests/test_EclFilesComparator.cpp.o
NOTE: please install ccache for faster compilation of python bindings.
/Users//
define BOOST_PP_REPEAT BOOST_PP_CAT(BOOST_PP_REPEAT_, BOOST_PP_AUTO_REC(BOOST_PP_REPEAT_P, 4))
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:22:32: note: expanded from macro 'BOOST_PP_CAT'
define BOOST_PP_CAT(a, b) BOOST_PP_CAT_I(a, b)
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:29:34: note: expanded from macro 'BOOST_PP_CAT_I'
define BOOST_PP_CAT_I(a, b) a ## b
^
^
/usr/local/opt/boost/include/boost/test/tools/old/interface.hpp:67:47: note: expanded from macro 'BOOST_TEST_TOOL_IMPL'
BOOST_PP_IF( frwd_type, report_assertion, check_frwd ) (
^
1 warning generated.
[ 49%] Linking CXX executable bin/AquiferTests
[ 49%] Built target AquiferTests
[ 49%] Building CXX object CMakeFiles/compareECL.dir/test_util/compareECL.cpp.o
Scanning dependencies of target test_SummaryNode
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -iwithsysroot/System/Library/Frameworks/System.framework/PrivateHeaders -iwithsysroot/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/Headers -arch arm64 -arch x86_64 -Werror=implicit-function-declaration -UNDEBUG -I/Users//opm-common/python/pybind11/include -I/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8 -I/Users//opm-common -I/Users//opm-common/external/fmtlib/include -I/Users//opm-common/external/fmtlib/include -I/Users//opm-common/external/cjson -I/Users//opm-common/include -I/Users//opm-common -I/usr/local/include -I/usr/local/opt/boost/include -I/Users//
define BOOST_PP_REPEAT BOOST_PP_CAT(BOOST_PP_REPEAT_, BOOST_PP_AUTO_REC(BOOST_PP_REPEAT_P, 4))
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:22:32: note: expanded from macro 'BOOST_PP_CAT'
define BOOST_PP_CAT(a, b) BOOST_PP_CAT_I(a, b)
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:29:34: note: expanded from macro 'BOOST_PP_CAT_I'
define BOOST_PP_CAT_I(a, b) a ## b
^
^
/usr/local/opt/boost/include/boost/test/tools/old/interface.hpp:67:47: note: expanded from macro 'BOOST_TEST_TOOL_IMPL'
BOOST_PP_IF( frwd_type, report_assertion, check_frwd ) (
^
1 warning generated.
[ 50%] Linking CXX executable bin/test_Inplace
[ 50%] Built target test_Inplace
Scanning dependencies of target TableColumnTests
[ 50%] Linking CXX executable bin/test_Serializer
[ 50%] Building CXX object CMakeFiles/TableColumnTests.dir/tests/parser/TableColumnTests.cpp.o
[ 50%] Built target test_Serializer
Scanning dependencies of target test_EclRegressionTest
[ 51%] Building CXX object CMakeFiles/test_EclRegressionTest.dir/tests/test_EclRegressionTest.cpp.o
1 warning generated.
cxx/converters.cpp:19:12: warning: local variable 'output' will be copied despite being returned by name [-Wreturn-std-move]
return output;
^~~~~~
cxx/converters.cpp:19:12: note: call 'std::move' explicitly to avoid copying
return output;
^~~~~~
std::move(output)
[ 51%] Linking CXX executable bin/TableColumnTests
[ 51%] Built target TableColumnTests
[ 51%] Building CXX object CMakeFiles/test_EclRegressionTest.dir/test_util/EclFilesComparator.cpp.o
Scanning dependencies of target test_rst
[ 51%] Building CXX object CMakeFiles/test_rst.dir/tests/test_rst.cpp.o
1 warning generated.
clang -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -iwithsysroot/System/Library/Frameworks/System.framework/PrivateHeaders -iwithsysroot/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/Headers -arch arm64 -arch x86_64 -Werror=implicit-function-declaration -UNDEBUG -I/Users//opm-common/python/pybind11/include -I/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8 -I/Users//opm-common -I/Users//opm-common/external/fmtlib/include -I/Users//opm-common/external/fmtlib/include -I/Users//opm-common/external/cjson -I/Users//opm-common/include -I/Users//opm-common -I/usr/local/include -I/usr/local/opt/boost/include -I/Users//
define BOOST_PP_REPEAT BOOST_PP_CAT(BOOST_PP_REPEAT_, BOOST_PP_AUTO_REC(BOOST_PP_REPEAT_P, 4))
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:22:32: note: expanded from macro 'BOOST_PP_CAT'
define BOOST_PP_CAT(a, b) BOOST_PP_CAT_I(a, b)
^
/usr/local/opt/boost/include/boost/preprocessor/cat.hpp:29:34: note: expanded from macro 'BOOST_PP_CAT_I'
define BOOST_PP_CAT_I(a, b) a ## b
^
^
/usr/local/opt/boost/include/boost/test/tools/old/interface.hpp:67:47: note: expanded from macro 'BOOST_TEST_TOOL_IMPL'
BOOST_PP_IF( frwd_type, report_assertion, check_frwd ) (
^
[ 54%] Linking CXX executable bin/IOConfigIntegrationTest
[ 54%] Linking CXX executable bin/test_AggregateWellData
[ 54%] Built target IOConfigIntegrationTest
[ 54%] Built target test_AggregateWellData
1 warning generated.
[ 54%] Linking CXX executable bin/test_AggregateActionxData
[ 54%] Built target test_AggregateActionxData
make: *** [all] Error 2
</details>
The logs are slightly redacted, to hide some paths
About the OpenMP issue. For some reason, Apple disables -fopenmp in the clang they provide. There are workarounds, but they may vary with version.
If I try running the generated setup-build.sh script, I get this error message
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/string.h:60:15: fatal error: 'string.h' file not found
#include_next <string.h>
^~~~~~~~~~
1 error generated.
After searching a git, I found that that problem can be solved by including -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk "somewhere". By adding that path, prepending it with /usr/include (or the result from xcrun --show-sdk-path) to include_dirs in setup.py, I get another error again;
Trying to install with additional path
cp: /Users/***/opm-common/python and /Users/***/opm-common/python are identical (not copied).
NOTE: please install ccache for faster compilation of python bindings.
/Users/***/<target>/venv/lib/python3.8/site-packages/setuptools/dist.py:484: UserWarning: Normalizing '2022.04' to '2022.4'
warnings.warn(tmpl.format(**locals()))
running build
running build_py
running egg_info
writing opm.egg-info/PKG-INFO
writing dependency_links to opm.egg-info/dependency_links.txt
writing top-level names to opm.egg-info/top_level.txt
writing manifest file 'opm.egg-info/SOURCES.txt'
running build_ext
building 'opm.libopmcommon_python' extension
/Library/Developer/CommandLineTools/usr/bin/c++ -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -iwithsysroot/System/Library/Frameworks/System.framework/PrivateHeaders -iwithsysroot/Applications/Xcode.app/Contents/Developer/Library/Frameworks/Python3.framework/Versions/3.8/Headers -arch arm64 -arch x86_64 -Werror=implicit-function-declaration -UNDEBUG -I/Users/***/opm-common/python/pybind11/include -I/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8 -I/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX.sdk/usr/include -I/Users/***/opm-common -I/Users/***/opm-common/external/fmtlib/include -I/Users/***/opm-common/external/fmtlib/include -I/Users/***/opm-common/external/cjson -I/Users/***/opm-common/include -I/Users/***/opm-common -I/usr/local/include -I/usr/local/opt/boost/include -I/Users/***/<target>/venv/include -I/Library/Developer/CommandLineTools/Library/Frameworks/Python3.framework/Versions/3.8/include/python3.8 -c cxx/unit_system.cpp -o build/temp.macosx-10.14-x86_64-3.8/cxx/unit_system.o -std=c++17 -DFMT_HEADER_ONLY
In file included from cxx/unit_system.cpp:3:
In file included from cxx/export.hpp:4:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/pybind11.h:49:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/attr.h:13:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/cast.h:13:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/pytypes.h:12:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/detail/common.h:144:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/unordered_set:366:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__hash_table:18:
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:321:9: error: no member named 'signbit' in the global namespace
using ::signbit;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:322:9: error: no member named 'fpclassify' in the global namespace
using ::fpclassify;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:323:9: error: no member named 'isfinite' in the global namespace
using ::isfinite;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:324:9: error: no member named 'isinf' in the global namespace
using ::isinf;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:325:9: error: no member named 'isnan' in the global namespace
using ::isnan;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:326:9: error: no member named 'isnormal' in the global namespace
using ::isnormal;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:327:7: error: no member named 'isgreater' in the global namespace; did you mean '::std::greater'?
using ::isgreater;
^~
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/functional:738:29: note: '::std::greater' declared here
struct _LIBCPP_TEMPLATE_VIS greater : binary_function<_Tp, _Tp, bool>
^
In file included from cxx/unit_system.cpp:3:
In file included from cxx/export.hpp:4:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/pybind11.h:49:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/attr.h:13:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/cast.h:13:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/pytypes.h:12:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/detail/common.h:144:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/unordered_set:366:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__hash_table:18:
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:328:7: error: no member named 'isgreaterequal' in the global namespace; did you mean '::std::greater_equal'?
using ::isgreaterequal;
^~
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/functional:767:29: note: '::std::greater_equal' declared here
struct _LIBCPP_TEMPLATE_VIS greater_equal : binary_function<_Tp, _Tp, bool>
^
In file included from cxx/unit_system.cpp:3:
In file included from cxx/export.hpp:4:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/pybind11.h:49:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/attr.h:13:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/cast.h:13:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/pytypes.h:12:
In file included from /Users/***/opm-common/python/pybind11/include/pybind11/detail/common.h:144:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/unordered_set:366:
In file included from /Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__hash_table:18:
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:329:9: error: no member named 'isless' in the global namespace
using ::isless;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:330:9: error: no member named 'islessequal' in the global namespace
using ::islessequal;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:331:9: error: no member named 'islessgreater' in the global namespace
using ::islessgreater;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:332:9: error: no member named 'isunordered' in the global namespace
using ::isunordered;
~~^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/cmath:333:9: error: no member named 'isunordered' in the global namespace
using ::isunordered;
~~^
13 errors generated.
error: command '/Library/Developer/CommandLineTools/usr/bin/c++' failed with exit status 1
OK - this was a lot of error messages. Before we go further with the Python. Please check and verify that you can build the c++ library. Many of the warnings are for them tests - for a start I would configure cmake to build without tests.
The error messages you report seem to come from pybind11 itself - a bit surprising?
I tried compiled the library itself, and that seemed to work;
mkdir release.build
cd release.build
cmake ..
make -j4
Most of the test cases seemed to work as expected, but some of them failed.