Observational Health Data Sciences and Informatics
Observational Health Data Sciences and Informatics
CohortDiagnostics
An R package for performing various cohort diagnostics.
CommonDataModel
Definition and DDLs for the OMOP Common Data Model (CDM)
Criteria2Query
[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM
Cyclops
Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.
DatabaseConnector
An R package for connecting to databases using JDBC.
ETL-Synthea
A package supporting the conversion from Synthea CSV to OMOP CDM
FeatureExtraction
An R package for generating features (covariates) for a cohort using data in the Common Data Model.
Eunomia
An R package that facilitates access to a variety of OMOP CDM sample data sets.
PhenotypeLibrary
A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohdsi-phenotype-library-announcements/16910