Observational Health Data Sciences and Informatics

Results 21 repositories owned by Observational Health Data Sciences and Informatics

CohortDiagnostics

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An R package for performing various cohort diagnostics.

CommonDataModel

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Definition and DDLs for the OMOP Common Data Model (CDM)

Criteria2Query

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[In Development] An application to parse freetext inclusion criteria and produce a structured cohort definition that can be executed against OMOP CDM

Cyclops

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Cyclops (Cyclic coordinate descent for logistic, Poisson and survival analysis) is an R package for performing large scale regularized regressions.

DatabaseConnector

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An R package for connecting to databases using JDBC.

ETL-Synthea

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A package supporting the conversion from Synthea CSV to OMOP CDM

FeatureExtraction

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An R package for generating features (covariates) for a cohort using data in the Common Data Model.

Eunomia

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An R package that facilitates access to a variety of OMOP CDM sample data sets.

PhenotypeLibrary

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A repository to store, organize and maintain the content of the OHDSI Phenotype library. OHDSI Forum post https://forums.ohdsi.org/t/ohdsi-phenotype-library-announcements/16910

Hades

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Health Analytics Data-to-Evidence Suite (HADES): A collection of R packages for performing analytics against the Common Data Model.