PatientLevelPrediction
PatientLevelPrediction copied to clipboard
OHDSI
An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
We ran the shiny app for our PLP prediction model, but after running it, the app was empty - it did not contain any of the data. Are you able...
We used the PLP package to develop a model and weight came out as the top predictor. However, our understanding is that in the PLP this is used as a...
**Is your feature request related to a problem? Please describe.** When performing external validation of an existing model on multiple databases, I ran into a problem when wanting to plot...
Same idea as for `runMultiplePlp` . If data has already been extracted, load it instead of re-extracting. If an analysis has been done, proceed to next one.
- Add error handling for `getPlpData`. - Allow passing of path to model instead of model object.
Currently our vignettes are automatically built into html both for website and package. Additionally there are manually built pdf vignettes (built with [this](https://github.com/OHDSI/PatientLevelPrediction/blob/main/extras/PackageMaintenance.R#L33)). This manual step is not ideal. It...
**Describe the bug** When I try running the XGboost R package generated by OHDSI Atlas patient-level prediction. It give this error:  The dataset that I'm using is generated from...
When running `createPlpResultTables` with `deleteTables` set to `TRUE` it doesn't remove the migration tables that have been generated. I'm not so familiar with the migration functionality so maybe this is...
oracleTempEmulation schema is about to be removed from DatabaseConnector (see https://github.com/OHDSI/DatabaseConnector/issues/289) When FeatureExtraction has removed (it we can remove it. See https://github.com/OHDSI/FeatureExtraction/issues/126) It's currently used in [getCohortCovariateData](https://github.com/OHDSI/PatientLevelPrediction/blob/1dfc46bb55265f6620049e1ebf9e5018b6a98cf3/R/AdditionalCovariates.R#L41) as input and...