osl

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Add MNE as option for source recon

3

It would be good if we could use minimum norm estimate (MNE) as an alternative to beamforming. This will especially be useful when we expect highly correlated sources (e.g., in...

matsvanes

I was trying to load the following dataset: https://www.nature.com/articles/s41597-023-02752-5 and realised that OSL does not support this KIT dataset with `.con` MEG data files. This can be supported using https://mne.tools/dev/generated/mne.io.read_raw_kit.html...

DJayalath

Documentation improvements

1

Keep track of the OSL paper requirements: - Put links in the API for the preproc config, and GLM design, pointing to tutorial. Ideally we improve documentation on how to...

matsvanes

open3d required in source recon package

2

open3d is used in the `osl.source_recon` package. It needs to be added to the requirements here: https://github.com/OHBA-analysis/osl/blob/main/setup.py#L11-L17

cgohil8

sign flipping template subject variability

2

We're often processing data in batches - for whatever reason. However, if we iteratively use `find_template_subject` with different inputs, we have the risk of using different templates for sign-flipping different...

matsvanes

The coordinates that are used in the surfaces plot of the source recon report are quite random. At least the sagittal and coronal planes seem to display a frame that...

matsvanes

matsvanes

Think this is well worth looking at for making osl citable: https://citation-file-format.github.io/#/create-a-citationcff-file-now citation-file-format.github.io [Citation File Format (CFF)](https://citation-file-format.github.io/#/create-a-citationcff-file-now) Landing page for the Citation File Format (CFF), a YAML 1.2-based format for...

matsvanes

Option to source reconstruct eye ball parcels

2

Would be good to have the option of using parcellation files that include eye balls.

cgohil8

Implement bilateral beamformer in source recon

1

matsvanes