Bo Sun

Thanks for explaining, that makes sense now. In that case the only desired addition, if possible, would be to break up annot.fa to match cdr3.out and report.tsv or to have...

Hi @mourisl , this works a treat! thank you so much for that! I will keep the thread open for @cwxiix and the whitelist issue, but this solves the indexing

Our cluster structure is a little complex, but each node runs a version of linux. Just to sanity check, are there any hardcoded parts in the script that require the...

Brilliant, thanks. Are there any future plans on a more nuanced way to take this into account? Have you found zero padding to influence the transfer certainty?

Thanks, well one example is installing pertpy with python v 3.10.6 in a venv goes fine, but when you load it, it tells you to use sccoda you have to...

Yes, fresh venv and OS is: NAME="CentOS Linux" VERSION="7 (Core)" ID="centos" ID_LIKE="rhel fedora" VERSION_ID="7" PRETTY_NAME="CentOS Linux 7 (Core)" ANSI_COLOR="0;31" CPE_NAME="cpe:/o:centos:centos:7" HOME_URL="https://www.centos.org/" BUG_REPORT_URL="https://bugs.centos.org/" CENTOS_MANTISBT_PROJECT="CentOS-7" CENTOS_MANTISBT_PROJECT_VERSION="7" REDHAT_SUPPORT_PRODUCT="centos" REDHAT_SUPPORT_PRODUCT_VERSION="7"

Hi, I am going to try this function this week. Can I check a few things for the use_rep option? Would you recommend: - Calculating an embedding per dataset? or...

Thanks so much for the response. When I have downtime I could work on a wrapper. I think just replicating what you did with the Leiden and Louvain clusters is...