Suggestion for better visualizations of oncoplot

[qingjian1991]

Hi:

In the function plotMutProfile, the colors of cells indicate the status of mutations for "SP" (Shared pattern: Public/Shared/Private), "CS" (Clonal status: Clonal/Subclonl) or "SPCS" status. However, users may want to show the alterations status of mutations (nonsynonymous, stopgain, stoploss et al.), which are available in the MAF files.

Therefore, could you add a parameter in the plotMutProfile to show the alterations status of mutations.

Example Figure is as below:

Bests

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