NicMAlexandre

I tried regenerating the file with fun annotate iprscan and I'm getting the same errors. funannotate iprscan -i ../Proteinfiles/XXX -m local -c 16 -o XXX.xml --iprscan_path /global/scratch/users/XXX/interproscan-5.59-91.0/interproscan.sh

I can check the intermediate files in a few days I’m traveling abroad, but I ran funannotate iprscan exactly as you suggest here with the same errors. Are you saying...

I also ran interproscan.sh manually as you suggest with the same error. All proper flags were used. On Thu, Nov 10, 2022 at 5:18 AM Nicolas Alexandre ***@***.***> wrote: >...

No worries at all I totally understand that :) what is the latest version you have used of interproscan that should work? On Thu, Nov 10, 2022 at 5:52 AM...

Amazing thank you so much! On Thu, Nov 10, 2022 at 6:47 AM Jon Palmer ***@***.***> wrote: > I'm using 5.52-86.0 and I know that works. I don't upgrade it...

Ah I see, so are you saying I should run this with interproscan.sh manually and generate multiple format types, then just do a conversion from the json format to xml?...

Cool, thanks! That makes sense. On Fri, Nov 25, 2022 at 11:43 AM Jason Stajich ***@***.***> wrote: > Currently it only supports interpro xml as input so you have to...

I should note that I'm working with two other groups that have been reporting the same errors with truncation.

Hi Emily, I was not able to sort out the issue. But I plan to use the software again soon and will hopefully find a solution. On Mon, Oct 23,...

Hi Robert, When I run this command, I'm not sure where the racon_test file is. Do you know the path to the output file? On Sun, Sep 9, 2018 at...