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NeurodataWithoutBorders
A Python API for working with Neurodata stored in the NWB Format
## Description Pushing the "edit on github" button in the doc, does not link to the right page. It is probably a very minor problem but I do not know...
The documentation for reading from NWB files could be strengthened with real-like application of creating scientific figures from NWB files. Current documentation shows how to access individual items but shows...
The pyNWB documentation is really well structured, convenient and easily usable. The API documentation is also thorough at each individual function. Still, it is a little challenging to convert data...
This works: ```python nwb.electrodes['group_name'][:] ``` But you can't use the same syntax with a `DynamicTableRegion`, for instance when you get the `electrodes` field from an `ElectricalSeries`. This doesn't work: ```python...
The Ophys tutorial https://pynwb.readthedocs.io/en/stable/tutorials/domain/ophys.html#sphx-glr-tutorials-domain-ophys-py currently does not describe the use of the ``MotionCorrection`` and ``CorrectedImageStack`` types and how they integrate with the other types. It would be useful to add...
## Possible Future Enhancement This ticket is mainly as a note for a possible future enhancement, i.e., something to possibly look at in the future. I just came across the...
`NWBContainer` and `DynamicTable` represents groups and `NWBData` represents datasets. The `_fieldsname` property differs between the three of them and is confusing and unintuitive. `NWBContainer._fieldsname` is `'__nwbfields__'` `DynamicTable._fieldsname` is `'__fields__'` `NWBData._fieldsname`...
Close #990. Requires https://github.com/hdmf-dev/hdmf/pull/280.
I'm trying to add some get_class defaults for ndx-MIES as requested by @rly in https://github.com/nwb-extensions/staged-extensions/pull/15. But it fails on the recursive type definition: https://github.com/t-b/ndx-MIES/blob/5e91258312b835aab87942d336081cec37192f86/src/spec/create_extension_spec.py#L55-L67 Versions: pynwb 1.4.0 hdmf 2.2.0 Reproducable...
## Description Hi, I would like to copy some data containers from an NWB file to another _already existing_ NWB file, open in `r+` mode. But I'm unable to do...
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A Python API for working with Neurodata stored in the NWB Format