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Loading Axion Biosystems AXIS data

Open alexmascension opened this issue 2 years ago • 6 comments

Hi!

Does spikeinterface support loading .raw or .spk formats of AXIS data? I don't see it in the docs, so I guess this format is not implemented.

Thanks!

alexmascension avatar Jun 07 '23 10:06 alexmascension

Hi @alexmascension Neo does not support this format as far as I can see. Feel free to open a PR to add a corresponding IO to Neo, see the instructions for adding a new format. As far as I know spikeinterface does not use Neo to load spiking data, so for the .spk files you will need to check with that project directly.

JuliaSprenger avatar Jun 08 '23 07:06 JuliaSprenger

Hi @JuliaSprenger, I'm using the SpikeInterface module to do the loading, so I'm not sure if I'd be able to do the PR. I was redirected by @alejoe91 to open the issue here.

alexmascension avatar Jun 08 '23 10:06 alexmascension

@alexmascension do you know if there is a Python API to open Axion data?

alejoe91 avatar Jun 08 '23 10:06 alejoe91

I can't find it. They currently work with MATLAB files to load the data. I will try to contact them to see if they have some Python code for that (although I guess they won't).

alexmascension avatar Jun 08 '23 11:06 alexmascension