philosopher
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Failed Mass offset search for PAL (without PTMProphet): PeptideProphet Error Message
I am trying to search my PAL dataset with the Mass offset workflow to precisely assign the sites of labeling. I encountered the PeptideProphet error message and don't know how to address it properly, so any of your help is greatly appreciated.
Here is my zipped log file for your review: log_2024-03-02_12-43-59.txt.zip