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Published 20 hours ago • verified publisher icon Nesvilab

ProteinProphet Error

Open uonnet opened this issue 2 years ago • 14 comments

I am trying to run philosopher pipeline, but it stopped at the ProteinProphet step with an error

shell-init: error retrieving current directory: getcwd: cannot access parent directories: No such file or directory
sh: /tmp/78fe0bc2-455f-4e07-b5dc-669bf8426896/batchcoverage: No such file or directory
command "/tmp/78fe0bc2-455f-4e07-b5dc-669bf8426896/batchcoverage "/home/db/2021-08-10-decoys-custom_database_swissprot_trembl.fasta.fas" "/tmp/78fe0bc2-455f-4e07-b5dc-669bf8426896/interact.prot.xml.covinfo" "/tmp/78fe0bc2-455f-4e07-b5dc-669bf8426896/interact.prot.xml.cov"" failed with exit code 32512
time="01:54:26" level=fatal msg="Cannot read file. open /tmp/78fe0bc2-455f-4e07-b5dc-669bf8426896/interact.prot.xml: no such file or directory"

This is the whole log o1011868.txt

I hope that you can let me know how to fix this problem. Thanks!

uonnet avatar Aug 13 '21 10:08 uonnet