FragPipe
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Feature request: Detailed reporting of identified fragment ions
Dear Fragpipe Team, thanks for your amazing work! We are currently trying to extract information at fragment ion level from FragPipe results. Ideally, we would need a report file that provides addition information at the fragment ion level for each identified PSM (in the psm.tsv) , i.e. observed product_MZ, theoretical_product_MZ, Intensity, Annotation. This file will likely be relatively large in size, but ideal for e.g. visualization of the identified spectra.
Best regards,
Stefan Tenzer