about 4D-TMT of timsTOF Pro

[CassyGu]

Hello, Can I use TMT-Interator to analysis .mxML files from timsTOF Pro of 4D-TMT？？

[fcyu]

You probability can, but the result might not be optimal.

Best,

Fengchao

[anesvi]

I don’t know if philosopher labelfree command will work (which is needed for TMT-Integrator). We could possibly make a version that does not require it, but we have not tested TimsTOF TMT data

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From: Fengchao @.> Sent: Tuesday, September 13, 2022 10:49:15 PM To: Nesvilab/FragPipe @.> Cc: Subscribed @.***> Subject: Re: [Nesvilab/FragPipe] about 4D-TMT of timsTOF Pro (Issue #827)

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You probability can, but the result might not be optimal.

Best,

Fengchao

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