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Specifying the output directory
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I'm running MSFragger from the command line as part of a pipeline. I need away to control the output directory (I found only a parameter to control the output format but not the location where the file will be created) is there one? if not what are the rules for the location (it seems to behave differently if it runs in local docker vs ECS)
Thanks,
p.s. If this is not the right place to ask these kind of questions please direct me to it.