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Custom glycosites

Open dennissv opened this issue 2 years ago • 2 comments
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Hello, we're studying organisms that has a general O-glycosylation system that targets a specific three amino acid motif. The regex for this motif would be D[ST][AILVMTSGCF] where it's the S or T that's glycosylated. I'm now wondering what the best approach to add this rule would be? Is it possible to use some sort of regex in FragPipe for glycosites? Thanks in advance!

Best, Dennis

dennissv avatar Sep 25 '23 09:09 dennissv