XBX-xbx

tail: +: invalid number of bytes with run-asm-pipeline.sh in haploid mode

4

Hello ! I hope for some solutions for my questions. My Bash version is: GNU bash, version 4.2.46(2)-release (x86_64-redhat-linux-gnu), and my 3d-dna version is version 180114. When running run-asm-pipeline.sh in...

Hello, Prof. Ruan, I wonder if I can use the parameter "-l" when I use --load-alignments?

Only one sample or multiple samples can be used in wtdbg2?

1

Hi, following are my two question about the use of wtdbg2. I wonder whether the multiple ccs sequencing files can be derived from several samples, or are supposed to be...

If the branch lenghth in species tree are necessary in my analysis using hyphy?

3

Dear hyphy users and developers, I found it really convenient for using this tool to identity selections among species. Here, I face an issue and hope you to help me...

Question: Still have erros related with MSA serve when I run localcolabfold on HPC System, with --templates --custom-template-path been added

3

**Caution: Please only report your issue related to the installation on your local PC or macOS.** If you can get the help message by `colabfold_batch --help` or run a test...

Different p-value in each independent run?

4

I use test_diff to conduct Differential enrichment analysis, I had impute my data using MLE methods in advance. I found for the same protein, the p-values derived from different runs...

Install error

3

I face a problem like this: conda create -n liftoff -c bioconda liftoff -y Collecting package metadata (current_repodata.json): done Solving environment: failed with repodata from current_repodata.json, will retry with next...

Hello, I was new in using Racon for polishing. In my log file, I found some warning like this: [racon::Window::generate_consensus] warning: contig 670 might be chimeric in window 48! I...

Dear hyphy users and developers, I found it really convenient for using this tool to identity selections among species. Here, I face an issue and hope you to help me...