NelsonGon
> Currently this issue cannot be reproduced with a stable usecase. Keep an eye on it. I am using the latest Fiji on Ubuntu 20.04 and cannot cancel jobs, I...
Hello, thank you for this. I would like to know if this means that I can run the analysis in the cloud for instance on Colab. This might help those...
I am having a similar issue with `fviz_pca_var`, did you solve it? I think there's some bug in the internal working of length matching for `fviz_pca_var`. The `.add_ind_groups` function which...
> I don't think it's necessary to modify it. (1) When the input order of the genelist changes, the NES and pvalue/p.adjust/qvalues of the enrichment result keep still, except for...
> If the order of input is randomly sorted, the result(rank and leading_edge) will be affected: [test_gsea.pdf](https://github.com/YuLab-SMU/DOSE/files/7666543/test_gsea.pdf) Thanks, I've only been looking at it visually and it seemed the graph...
Hi @huerqiang I have taken a look at what `fgsea` does and it seems the order does in fact not matter in which case the sorting may be irrelevant. From...
> It must be descending in `DOSE`. I set `by` to `fgsea` but still cannot sort by ascending order. Is `fgsea` also using only descending order?
Following up on this. I found that setting `channel_axis` and `channels` at the same time messes up the segmentation. My understanding was that the `channel_axis` was to specify if the...
Yep, this breaks MacOS
LetterCloud only returns the word and not the dataset.