cheminformatics
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Mpvenkatesh/az
The features previously implemented in the az repo have been incorporated into this cheminformatics repo. These include:
- Being able to change the fingerprint length and radius through the UI
- Generating a plot of the generated compounds
- Naming the generated analogues better
- A new way of generation that learns a direction to move in latent space by using a lasso regression to the specified property in the specified cluster, and then taking the specified number of steps in that direction from a specified number of compounds in the cluster.
- Using a neural network with the specified architecture and activation functions to predict the specified property on a testing cluster after fitting to the training cluster
- Performing similarity search on the GPU (and comparing it to the Tanimoto distances obtained by doing the same on the CPU through RDKit to show they are the same)
@rilango , I believe my branch is ready for the merge with dev. Please let me know if you have any suggestions or comments.