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Mpvenkatesh/az

Open mpvenkatesh opened this issue 3 years ago • 1 comments

The features previously implemented in the az repo have been incorporated into this cheminformatics repo. These include:

  • Being able to change the fingerprint length and radius through the UI
  • Generating a plot of the generated compounds
  • Naming the generated analogues better
  • A new way of generation that learns a direction to move in latent space by using a lasso regression to the specified property in the specified cluster, and then taking the specified number of steps in that direction from a specified number of compounds in the cluster.
  • Using a neural network with the specified architecture and activation functions to predict the specified property on a testing cluster after fitting to the training cluster
  • Performing similarity search on the GPU (and comparing it to the Tanimoto distances obtained by doing the same on the CPU through RDKit to show they are the same)

mpvenkatesh avatar Feb 28 '22 04:02 mpvenkatesh

@rilango , I believe my branch is ready for the merge with dev. Please let me know if you have any suggestions or comments.

mpvenkatesh avatar Mar 24 '22 05:03 mpvenkatesh