GPU poa implementation trims windows when using short reads with coverage greater than 200

[rvaser]

Data provided via email. I have run the following commands:

minimap2 -t 8 -x sr assembly.fasta reads.fastq > overlaps.paf
racon_gpu -t 4 -c 4 reads.fastq overlaps.paf assembly.fasta > polished.fasta

Best regards, Robert