Standardize all filenames in accordance with NCO guidelines

[WalterKolczynski-NOAA]

Description We need a review of all files generated in COM and update filenames to NCO standards. ATM files are mostly good here, but wave and the new coupled filenames need work.

Requirements Standardized filenames for all files created in COM.

Acceptance Criteria (Definition of Done) Standardized filenames for all files created in COM.

Dependencies None