Move some ROF yaml parameters to config

[TeaganKing]

We should move some of the parameters from nblibrary/rof/setup/setup.yaml into the cupid config file (particularly these directories: geospatial_dir, ancillary_dir, ref_flow_dir).

[nmizukami]

Yes, these can be moved to config.yml under key_metrics. Looks like each component can have its unique parameters?

[TeaganKing]

Yes, each notebook for each component has a parameter section such as this one where you can put parameters that users would be likely to change.