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Ancient microbiome snakemake workflow
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Not an issue of aMeta per se but I have recently discovered that the latest version FastQC v0.12.1 (first screenshot) installed currently with aMeta can give quite a different adapter...
@percyfal there is a snakemake-specific issue for you. When creating job-specific environments, there is an non-trivial error, which seems to be related to https://github.com/snakemake/snakemake/issues/2728. Apparently there is some race condition...