aMeta

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Currently, it is not easy for the users to look inside the results/AUTHENTICATION folder as the names of the subfolders represent taxIDs instead of scientific names. The same is valid...

LeandroRitter

This PR addresses issues #150, #142, #151, #153, #155, #157, #161, and adds lots of explanatory description to README

LeandroRitter

Missing Assigned Taxon IDs

2

I was reviewing the MaltExtract outputs and noticed that results for specific organisms (listed below) are missing: - Achromobacter denitrificans - Bacteroides vulgatus - Citrobacter koseri - Enterococcus hirae -...

ardasevkar

Default parameters in MaltExtract leading missing output

2

Hi, When comparing my previous mapping results -which seem to be authentic- with the aMETA output, I noticed that there were significantly fewer reads in each case. Upon further investigation...

ardasevkar

Error in Authentication_Score

5

Hi everyone, I can't find my way around this error and would greatly appreciate your help. ``` Error in rule Authentication_Score: jobid: 1289 input: results/MALT/MST2_055_m.trimmed.rma6, results/AUTHENTICATION/MST2_055_m/2483404/MaltExtract_output/log.txt, results/AUTHENTICATION/MST2_055_m/2483404/name_list.txt output: results/AUTHENTICATION/MST2_055_m/2483404/authentication_scores.txt log:...

renatolatorre

Bug in Authentication_Score rule

1

This seems to be a long-standing bug which popped up here and there (quite annoying) but did not cause serious problems, that is why we have not noticed it, but...

LeandroRitter

The png file for authentication plots doesn't render well on mac

1

 Left png file, right pdf file.

ZoePochon

Python syntax of Malt-build script doesn't work with Python 3.12.1

10

I was helping debug with @npsonis and it seems that the new python version 3.12.1 fails to read the syntax of one of the command in the malt-build.py script. This...

ZoePochon

percyfal

Fix erroneous links in snakemake report

percyfal