MrBayes icon indicating copy to clipboard operation
MrBayes copied to clipboard

Published 20 hours ago • verified publisher icon NBISweden

Illegal instruction.....

Open ZhexueM opened this issue 4 years ago • 3 comments

Hello together, i had installed your program on our cluster with different functions: normal and MPI-enabled.

If one user want to work with your software, he takes the MPI-enabled Variation and get everytime the error-message: illegal instruction.

He want to run the software with this command: srun mb .nex > log.txt

So, can everybody help me here please? Best regards from Berlin

Matthias

ZhexueM avatar Jun 26 '20 17:06 ZhexueM

Can you say something more about how you compiled the code? Can you reproduce the error yourself? Are the machine where the code was compiled and the machine where the code was run the same machine, or identical, or are the differences in libraries etc.?

Also, is srun the correct command to run MPI-enabled programs on your system? I'm more used to using mpirun ... mb (where ... are various options).

kusalananda avatar Jul 03 '20 10:07 kusalananda

Hello,

well I compiled it on my MASTER – Server & saved it on CLUSTER – Volume.

All the Node, Server, etc. are on the same DEBIAN – Buster – Versions and the libraries are the same too.

So, what did you need more?

Best regard

Matthias

Von: Andreas Kusalananda Kähäri [email protected] Gesendet: Freitag, 3. Juli 2020 12:59 An: NBISweden/MrBayes [email protected] Cc: ZhexueM [email protected]; Author [email protected] Betreff: Re: [NBISweden/MrBayes] Illegal instruction..... (#194)

Can you say something more about how you compiled the code? Can you reproduce the error yourself? Are the machine where the code was compiled and the machine where the code was run the same machine, or identical, or are the differences in libraries etc.?

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/NBISweden/MrBayes/issues/194#issuecomment-653488830 , or unsubscribe https://github.com/notifications/unsubscribe-auth/AO6MIXOOMTG57PZZ353FCTDRZW2X3ANCNFSM4OJQRKPQ . https://github.com/notifications/beacon/AO6MIXNPUQBJC4IYGCI3XY3RZW2X3A5CNFSM4OJQRKP2YY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOE3ZXFPQ.gif

ZhexueM avatar Jul 07 '20 19:07 ZhexueM

Could you provide

  1. computing environment, including the operating system and version
  2. details of the code compilation. including e.g. commands used to compile mrbayes
  3. an example dataset and mrbayes commands that can be run to reproduce the error

zhangchicool avatar Jul 08 '20 03:07 zhangchicool