Leon Hetzel

Hi @Nasrine26, regarding your questions: 1. I would suggest to look at the segmented image (stored as an additional layer in the ImageContainer) and do a visual inspectino of the...

Hi @Charlottehero, plase have a look at the previous post to evaluate segmentation quality. Bad results can be related to the data, do you think that the image quality might...

I think this would still add some value to the plotting capabilities of squidpy (more channels than 3). I recently ran into a similar problem and would be happy to...

I guess I was expected to create a copy from the view in that case and not alter `a`. Not perfectly sure if this is consistent. Does `v.X = csr_matrix(x[:30]).A`...

The "+" sign is meant for indicating drug combinations, this can be done with chemCPA as demonstrated [here](https://www.embopress.org/doi/full/10.15252/msb.202211517). I will make this more clear in a future PR

Hi @bhomass, why were you not able to remove those '+' signs from the drug names? What do you mean by `unposted input files`?

Hi @sepidism, I am not sure if I understood your questions correctly but the encoder takes in the treated cells which are then embedded in a disentangled fashion (latent space...

Hi @sepidism, The input to the model are simply the control genes of all cell lines present in the dataset, not treatment at all. The treatment is inferred only from...

Hi @rvinas, 1. We use level two (the GEX equivalent) 2. No, for the LINCS data, we only considered compounds, dosage, and cell line information 3. The differentially expressed genes...

Hi @xianglin226, Did you try running the `manual_seml_sweep.py` - this should work for you. Also, preparing the data and running the model are two different steps, could you clarify where...