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bclconvert module - KeyError

Open mikailbala opened this issue 1 year ago • 0 comments

'bclconvert' MultiQC module broke... The error:

Traceback (most recent call last): │ │ File "/opt/MultiQC-1.17/lib/python3.11/site-packages/multiqc/multiqc.py", line 689, in run │ │ output = mod() │ │ ^^^^^ │ │ File "/opt/MultiQC-1.17/lib/python3.11/site-packages/multiqc/modules/bclconvert/bclconvert.py", line 37, in init │ │ self.parse_qmetrics_data(bclconvert_data, qmetric) │ │ File "/opt/MultiQC-1.17/lib/python3.11/site-packages/multiqc/modules/bclconvert/bclconvert.py", line 412, in parse_qmet │ │ run_data = bclconvert_data[qmetrics_file["run_id"]] │ │ ~~~~~~~~~~~~~^^^^^^^^^^ │ │ KeyError: 'run_id' │ │

The file that triggers the error. The last file found was: <run_directory>/Analysis/1/Data/Reports/Quality_Metrics.csv The header of the file for reference is shown below

Lane,SampleID,index,index2,ReadNumber,Yield,YieldQ30,QualityScoreSum,Mean Quality Score (PF),% Q30

mikailbala avatar Aug 29 '24 15:08 mikailbala