MultiQC
MultiQC copied to clipboard
New module: Checkatlas
[NEW MODULE] This comment contains a description of changes (with reason)
- [x] CHANGELOG.md has been updated
- [x] (push last thursday)] There is example tool output for tools in the https://github.com/ewels/MultiQC_TestData repository or attached to this PR
- [x] Code is tested and works locally (including with
--lint
flag) - [ ] NO (do not understand what to do ?) docs/README.md is updated with link to below
- [x]
docs/modulename.md
is created - [x] Everything that can be represented with a plot instead of a table is a plot
- [x] Report sections have a description and help text (with self.add_section)
- [x] There aren't any huge tables with > 6 columns (explain reasoning if so)
- [x] Each table column has a different colour scale to its neighbour, which relates to the data (eg. if high numbers are bad, they're red)
- [x] Module does not do any significant computational work
New pre-commit tests are failing. I can't push changes to your fork for you, so can't fix for you sorry. To do so (within the MultiQC repo directory):
pip install pre-commit
pre-commit install
pre-commit run --all-files
I tried running the code on the test data, but the report is very broken: multiqc_report.html
General Stats table is broken:
Sections and plots are empty:
Please make sure that the code works with the test data and let me know when the module is ready for review 👍🏻
Shout if you need any help!
Phil