drep Drep doesn't detect mash even if it's installed.

Drep doesn't detect mash even if it's installed.

Open SilasK opened this issue 2 years ago • 3 comments

Hello, We encountered the following problem. https://github.com/metagenome-atlas/atlas/issues/547#issuecomment-1230550503

Drep doesn't detect mash even though it is installed.

Aug 30 '22 12:08 SilasK

Hello,

dRep detects mash using the Linux ‘which’ command. So it needs to be in the system path and able to called from anywhere.

Best, Matt

Aug 30 '22 14:08 MrOlm

What is strange that Dreo detects the correct path but still mentions there is an error.

Aug 31 '22 07:08 SilasK

Could it be that mash doesn’t have all the dependencies installed? Does running ‘mash -h’ give an error, for example?

Aug 31 '22 15:08 MrOlm