Non-reproducible results from command line [BUG]

[HernandoMV]

Describe the bug I am having different results with the GUI and the CLI, presumably with same arguments

To Reproduce Steps to reproduce the behavior:

1. Run cyto model on the attached image on the GUI with diameter 120, and the rest are default parameters. I get 2 ROIs
2. Run CLI as in the log below. I get 0 ROIs.

Run log python -m cellpose --dir /mnt/d/temp/test/ --pretrained_model cyto --diameter 120 --use_gpu --chan 0 --verbose 2024-01-11 15:26:17,559 [INFO] WRITING LOG OUTPUT TO /home/hernando/.cellpose/run.log 2024-01-11 15:26:17,559 [INFO] cellpose version: 2.2.3 platform: linux python version: 3.10.10 torch version: 2.0.1+cu117 2024-01-11 15:26:18,094 [INFO] ** TORCH CUDA version installed and working. ** 2024-01-11 15:26:18,094 [INFO] >>>> using GPU 2024-01-11 15:26:18,108 [INFO] >>>> running cellpose on 1 images using chan_to_seg GRAY and chan (opt) NONE 2024-01-11 15:26:18,109 [INFO] ** TORCH CUDA version installed and working. ** 2024-01-11 15:26:18,109 [INFO] >>>> using GPU 2024-01-11 15:26:18,109 [INFO] >> cyto << model set to be used 2024-01-11 15:26:18,199 [INFO] >>>> model diam_mean = 30.000 (ROIs rescaled to this size during training) 2024-01-11 15:26:18,200 [INFO] >>>> using diameter 120.000 for all images 2024-01-11 15:26:18,201 [INFO] 0%| | 0/1 [00:00<?, ?it/s] 2024-01-11 15:26:18,208 [INFO] ~~~ FINDING MASKS ~~~ 2024-01-11 15:26:19,037 [INFO] >>>> TOTAL TIME 0.83 sec 2024-01-11 15:26:19,050 [INFO] 100%|##########| 1/1 [00:00<00:00, 1.18it/s] 2024-01-11 15:26:19,050 [INFO] 100%|##########| 1/1 [00:00<00:00, 1.18it/s] 2024-01-11 15:26:19,050 [INFO] >>>> completed in 0.956 sec

Screenshots

Actual image

[carsen-stringer]

hmm are you sure it is absolutely the same image? or maybe the GUI is normalizing it different, what dtype is the image?

[HernandoMV]

Yeah it is the same image. A .tif file