Monica
I suppose you are using the very small peptide 1l2y. Ther distribution of the lipophilic potential on such a small surface is hard to assess. Could you test Calmodulin (File...
Looks OK (except the green spot, visible at the start). Can you see a more intense bump in the darker area?
Ah, OK. I thought it might be a mapping problem (normal inverted or something like)
 This was the flow in the earlier versions of BioBlender. In theory, it should be still the same!
Just a little explanation: Calculation of MLP is done frame by frame, because as the protein changes conformation, it may hide or expose patches with different MLP values. pyMLP includes...
Seems OK. How did you get it?
Yes!, this is exaclty the issue: both the surface and its features (MLP and EP) change frame by frame when the protein moves. Several groups around theworld are working to...
I just noticed that the image above is probably not what we want. This si due to the fact that pyMOL attributes colors to the mesh, related to the identity...
The Empty was introduced in the latest version: The idea was to have an Empty that can be used to 'govern' the entire molecule (rotate and translate), independent of the...
My suggestion would be that an Empty is associated to the single molecule: if the PDB contains > 1, then BioBledner might want to build >1 'atom clouds'. However, this...