Mikkel Dahl Andreasen

icon indicating a website link https://chem.au.dk/en/research/research-areas-and-groups/theoreticalchemistry/biomodelling

icon company Aarhus University, Department of Chemistry icon location PhD student in the Biomodelling group at the Department of Chemistry at Aarhus University

Results 14 comments of Mikkel Dahl Andreasen

Creating a bilayer with embedded small molecules

I have no idea why you get that system. This is what i get when i run your code replacing RES with CHOL (yellow is POPC, blue is CHOL in...

Creating a bilayer with embedded small molecules

Okay, I have a new idea of what is going wrong but i need you to do the following. - Update COBY again to v1.0.6 (I added a few extra...

Creating a bilayer with embedded small molecules

Thanks for the files. I think i know what is wrong. Try running the script below. ``` import sys import os import COBY sysname = "POPC_1MIMI_TEST" outdir = os.path.join("output_systems", sysname)...

Atomistic membrane?

Hello I haven't personally used Backward before but i have previously used CG2AT ([https://github.com/owenvickery/cg2at](https://github.com/owenvickery/cg2at)) to backmap my Martini3 systems. It might require you to create some mapping files for your...