Moritz E. Beber

@cdiener can probably explain this better than I do. The question is about the latter. We don't always expect it to be a valid solution at that point but looking...

@grst maybe you could take a look at https://github.com/nf-core/tools/pull/1282 and see if that would fit your needs? I agree that doing the job in Groovy is preferable and consider my...

@ewels showed my his work on the samplesheet schema on Friday but this is not it, I'm afraid.

I would suggest to split the two. There are many sources for FASTQ files, for example, public archives so it makes sense to have a separate subworkflow for QC that...

Is there a file where pytest config can be placed? Then it should be as simple as ```config [pytest] filterwarnings = ignore:PytestRemovedIn8Warning ```

You could use [something more specific](https://docs.python.org/3/library/warnings.html#describing-warning-filters) until the nodes module is fixed, e.g.: ``` [pytest] filterwarnings = ignore::PytestRemovedIn8Warning:_pytest.nodes:140 ``` The `UserWarning` from pytest-workflow honestly sounds like something that should be...

Sorry, it needs to be fully resolved apparently: ``` [pytest] filterwarnings = ignore::pytest.PytestRemovedIn8Warning:_pytest.nodes:140 ```

@mahesh-panchal what about ``` UserWarning: .git dir detected: /workspace/modules/.git. pytest-workflow will copy the entire .git directory and all files ignored by git. It is recommended to use the --git-aware option....

An enhancement of the Dockerfile could be to use https://mamba.readthedocs.io/en/latest/user_guide/micromamba.html

> > An enhancement of the Dockerfile could be to use https://mamba.readthedocs.io/en/latest/user_guide/micromamba.html > > We need to be able to test conda too. Can conda be installed using micromamba? Ah,...