Jianfeng

Configuration file: db_main.toml Description: As a database, miRTarBase has accumulated more than three hundred and sixty thousand miRNA-target interactions (MTIs), which are collected by manually surveying pertinent literature after NLP...

Configuration file: db_main.toml Description: miRNEST is an integrative collection of animal, plant and virus microRNA data. ```toml [db_mirnest] source_url = "http://rhesus.amu.edu.pl/mirnest/copy/downloads/{{version}}.gz" version_avaliable = ["mirnest_EST_predictions", "mirnest_targets", "mirnest_deep_predictions", "mirnest_degradomes", "mirnest_mirtrons", "mirnest_mirna_gene_structure"] ```

Configuration file: db_main.toml Description: RBPDB, the database of RNA-binding protein specificities ```toml [db_rbpdb] source_url = "http://rbpdb.ccbr.utoronto.ca/downloads/{{version}}" version_avaliable = ["RBPDB_v1.3.1_2012-11-21.sql", "RBPDB_v1.3.1_2012-11-21_TDT.zip", "RBPDB_v1.3.1_2012-11-21_CSV.zip"] ```

Configuration file: db_main.toml Description: APPRIS, annotating principal splice isoforms ```toml [db_appris] source_url = "http://apprisws.bioinfo.cnio.es/pub/current_release/datafiles/homo_sapiens/{{version}}/appris_data.principal.txt" version_avaliable = ["GRCh38", "rs108v26", "up201703v26", "a1v26", "GRCh37", "rs105v24", "g12v24"] ```

Configuration file: db_main.toml Description: LNCipedia is a public database for long non-coding RNA (lncRNA) sequence and annotation. The current release contains 127,802 transcripts and 56,946 genes. ```toml [db_lncipedia] source_url =...

Configuration file: db_main.toml Description: MSigDB (Molecular Signatures Database), The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. ```toml [db_msigdb] source_url = "http://bioinfo.rjh.com.cn/download/bioinstaller/msigdb/{{version}}"...

Configuration file: db_main.toml Description: miRCancer provides comprehensive collection of microRNA (miRNA) expression profiles in various human cancers which are automatically extracted from published literatures in PubMed. It utilizes text mining...

Configuration file: db_main.toml Description: DCDB (Drug Combination Database), Accumulating scientific and clinical evidences have suggested the use of drug combinations as a safe and effective approach, to treat complicated and...

Configuration file: db_main.toml Description: OncomiRDB, aiming at annotating the experimentally verified oncogenic and tumor-suppressive miRNAs from literature. ```toml [db_oncomirdb] source_url = "http://lifeome.net/database/oncomirdb/oncomirdb.v-{{version}}_download.txt" version_avaliable = "1.1-20131217" ```

Configuration file: db_main.toml Description: IslandViewer, This web site was developed so that researchers could easily view and download genomic islands for all published sequenced bacterial and archaeal genomes that have...