deepbgc

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Installation Failure

4

Hi, there! I've downloaded 'DeepBGC' on my Mac successfully, but there's some issue reported as follows when I tapped in 'deepbgc info'. `=================|_|===== version 0.1.30 ===== INFO 26/06 22:03:07 Available...

NiklausChung

Error during detector training

5

hello i faced a problem during detector o my sample here is the error message, it says i didn't use a negative dataset but actually i used one that is...

esraagithub

Hey, I have already got json file and uploaded that on antiSMASH but Now, from where I can get the svg of combined result? Looking for response. Thank you

MenusGarg

DeepBGC failed with ValueError: missing molecule_type in annotations

4

Hi, When I tried to use DeepBGC to analyze a genbank file downloaded from NCBI, I encountered an errror like this: Using TensorFlow backend. WARNING 11/02 15:54:49 From /opt/anaconda3/envs/deepbgc/lib/python3.7/site-packages/keras/backend/tensorflow_backend.py:74: The...

chengyou96

(deepbgc) [devaraja@rocket ~]$ deepbgc pipeline deepbgc/deepbgc-0.1-3.29/test/data/BGC0000015.fa _____ ____ ____ ____ | _ \ ___ ___ ____ | __ ) / ___) / ___) | | \ \/ _ \/ _...

devarajarun

deepbgc pipeline does not seem to use more than 2 cores?

2

Hello, Thank you for taking the time to develop this tool, it does exactly what I need it to do for my odd gene clusters. However, the only issue is...

bkm23644

Bumps [numpy](https://github.com/numpy/numpy) from 1.16.1 to 1.21.0. Release notes Sourced from numpy's releases. v1.21.0 NumPy 1.21.0 Release Notes The NumPy 1.21.0 release highlights are continued SIMD work covering more functions and...

dependabot[bot]

Retrain on MIBiG 2.0

11

Our current model is trained on MIBiG 1.4, we can retrain (and validate) the model. We can also demonstrate how our current model performs on the newly added BGCs.

prihoda

Installing deepBGC

8

I am trying to install deepBGC on my pc but I'm havig some issues that I cannot solve. I am using Python3.7.0 and conda and already added all the necessary...

planctoqueen

Deepbgc installation through conda

5

Hi, I hope you are doing well I am so interested to use deepbgc in my work, I think I could get interesting results using it. I have been trying...

ebervilla