Meltpinkg

Hello, @AndyLy2Zy The error may occurred when extracting sequences from the given reference. You can check whether the chromosomes in the input bam file are consistent with the input reference,...

Hello, @AndyLy2Zy You can add the parameter "--report_readid" which enables to report supporting read ids for each SV. Best, Shuqi

Hello, @AndyLy2Zy Sorry for my late reply. I received the assembled genome and used the latest version of cuteSV to apply SV detection. The commands I used are shown below:...

Hi, Quentin! @QuentinBoone The event that you mentioned has not been implemented in cuteSV. And I think it is significative that can be contained in our further work. But I'm...

Hello, Quentin I understand that event now. It is a nice idea and has not been implemented in cuteSV now. I'd like to add it to my to-do-list and achieve...

Hello, Quentin @QuentinBoone We have finished the update. With the newly added parameter "-include_bed", you can input a bed file. When this parameter is enabled, cuteSV will only consider the...

Hi @vmukhina Sorry for the late reply. For translocations, cuteSV reports only one record with the smaller chromosome for a translocation. The form of translocation is shown in the alternative...