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Hello, @johannesgeibel Thanks for pointing this out clearly. We have fixed this problem and updated it in GitHub. Please git clone the latest code and check the results. Best regards,...

Hello, @kendaida In our experiments we haven't met the errors like segmentation fault. I think it may due to the large size of Ivcf (since I haven't used such a...

Hello, Han! @Han-Cao Thanks for using cuteSV and giving such precise description and datasets. The inconsistency between force calling and discovery calling does exist in cuteSV. I separated the inconsistency...

Hello Han @Han-Cao For the given example, the IGV around the deletion breakpoint is shown below. From the alignment, there are about 20 reads that has a deletion signature with...

Hi Han (@Han-Cao), We have updated the new version of cuteSV (v2.0.1). The DR calculating of discovery calling is also updated. You can achieve the newest version via **git clone**...

Hello, @lunky-zao You can install the newest version from pip or GitHub and have another try. By the way, does other types of SV still exist in the output VCF?...

Hello, @aojielian The input reference should be concordant with the reference genome which the input bam is aligned to. The error may caused by the chromosome GL000008.2 doesn't exist in...

Hello, @jiadong324 Thanks for bringing this to me! We fixed this error and updated the codes in GitHub. You can git clone the newest codes and reinstall cuteSV via `python...

Hello, @luneangevin You can install the newest version from _pip_ or _GitHub_ and have another try. In addition, the parameter "-s" represents the minimum number of reads that support a...

Hi, @lg10is1 cuteSV calls SV in one sample at one time. To call SV in multiple sample, you can follow this step-by-step procedure: 1. Run cuteSV for each sample to...