Max Bladen
Max Bladen
Within the documentation for the `plot.tune()` function, there are two methods which describe the `plot.tune.splsda()` function. In the `S3methods-plot.tune.R` file, there is the original `plot.tune.splsda()`. However, there is also the...
🐞 **Describe the bug:** When running the `perf()` function on a `pls` object (using any PLS mode), if there are features which have near zero variance (nzv), the following error...
This PR will contain a series of commits which each add a variety of new test cases (and improve upon older ones) to increase the total coverage of the package....
test: first commit to trial the new test system which draws the ground truth values from external RData files
The `tune.spls()` function did not have any form of `BiocParallel` implementation which was quite misleading for users. As this function is likely to be more frequently used, this was a...
As correctly identified by user [@VilenneFrederique](https://github.com/VilenneFrederique), the `tune.block.splsda()` function was behavioring incorrectly when using `validation = "loo"`, such that the `n` parameter (denotes sample size) was *only* being set in...
After some initial exploration as part of rectifying problems noted in Issue #214, the inconsistency of the `BiocParallel` usage across all the `tune()` variants was noticed. In my exploration of...
User has dataframe (72 x 48) with some `NA`s. When they attempt to use `tune.pca()`, works fine. When they attempt the below call: `grid.keepX ui RTerm #> language (EN) #>...
This PR is in response to the bug raised by @Ning-L in #192. This PR replaces #193 for consistency's sake. This commit employs the fix suggested by @Ning-L, such that...
Despite `cim()` handling `pca` and `spca` object via the same code, their output components are different. This PR adds the `$x` and `$rotation` components to the `pca` object. This isn't...