Matthias Zepper

icon indicating a website link http://www.matthias-zepper.de

icon company @SciLifeLab icon location Stockholm icon location Computational biologist experienced in analyzing massive parallel sequencing data. Leveraging software for life science @NationalGenomicsInfrastructure

Results 16 comments of Matthias Zepper

Improved ext.args consolidation for STAR and TRIMGALORE

> Sorry, my bad. These should do it. That looks much better! Thank you very much! There are two tests failing, but to me, it doesn't seem that this is...

Build Juicebox with a GithubAction to standardize builds

I think, this is no longer needed or relevant.

Improve/add UMI deduplication metrics

Apologies for stonewalling on this issue before. While hunting down the cause for issue #1303, it occurred to me that probably a botched MultiQC config is behind this issue as...

Improve/add UMI deduplication metrics

#1308 has been merged to `dev` and will be released as part of rnaseq 3.15. Please give it a spin to see if it solves this issue @ppericard !

Some singularity images are missing when using `nf-core download demultiplex`

The main issue should be fixed with the [nf-core tools release 2.13.1](https://github.com/nf-core/tools/releases/tag/2.13.1) today! 👌🎉 _(I would still appreciate seeing an update to Nextflow in the future, but for now symlinks...

General CI failure in lint due to Azure error `No hosted parallelism has been purchased or granted`

> Is there an Azure support email address that we can get everyone to spam with a standard message to try to get them to notice? Bugging people is to...