KEMET
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Error regarding output directory
Thank you for your code, but I encountered an issue when running it.
This is how I used it. Under the 'eggnog' directory, there is a file named 'emapper.annotations', and under the 'genome' directory, there is a file named 'genome.fna'. The code I used is
python ./kemet.py -I ./eggnog -a eggnog --skip_hmm --skip_gsmm ./genome -q --log --path_output ./output
However, an error occurred: FileNotFoundError: [Errno 2] No such file or directory: './output/ktests/'
Strangely, when I manually created the entire folder, the code seemed to run smoothly, but no output file was generated.
I got the same error even when using your test files.