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Impurities and (n)elements (a.k.a. Shyam's wrench)

Open ml-evs opened this issue 3 years ago • 1 comments

I'll throw a wrench into the discussion. nelements should equal len(elements), this is fine. In an experiment with known impurities, a DB might want to list those impurities but not include them in the element_ratios, so then the list length would not match between elements and element_ratios

Originally posted by @shyamd in https://github.com/Materials-Consortia/OPTIMADE/issues/349#issuecomment-855955706

ml-evs avatar Jun 10 '21 12:06 ml-evs

... The statistical aspects of compositions are handled by species and species_at_sites, but there is currently no linkage from species_at_sites to elements, e.g. we do not require that set(symbol for species in entry.attributes.species for symbol in species.chemical_symbols) == entry.attributes.elements. Of course, impurity could mean 10% or it could mean 0.00001%...

I would suggest that given the existing interpretation (or lack thereof) of the specification, we should still merge this pending further discussion. This requirement has been implicit (and is coded up in the python-tools models, for example); if we decide to relax it based on this impurity use-case then that will not be a breaking change.

Originally posted by @ml-evs in https://github.com/Materials-Consortia/OPTIMADE/issues/349#issuecomment-855967360

ml-evs avatar Jun 10 '21 12:06 ml-evs